PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023342

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 438aa MW: 47583.7 Da PI: 6.2952

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023342	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.6	1.3e-35	43	158	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai++l +++ +++ + ++s +a+++s++ Cla023342 43 GRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKPAIDKLRELPGWNPNVLdmSFDKSATQAEKNSENkipvaihppegs 142 89*************************************************************5555544443222223333322222344555555555 PP TCP 89 ...............k 89 Cla023342 143 ttrisdrranlvagdG 158 5555444444444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-32	43	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.544	44	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MGEFSNQRPA KSSKTGIRSG GGGGGGGGEI VEVEGGRIVR SIGRKDRHSK VCTAKGPRDR 60 RVRLSAHTAI EFYDVQDRLG YDRPSKAVDW LIKKAKPAID KLRELPGWNP NVLDMSFDKS 120 ATQAEKNSEN KIPVAIHPPE GSTTRISDRR ANLVAGDGGI SECTMQNLPN TSTEENPNSD 180 NSSFLPPSFD SDSIVDTFKS FLPMTTTAAA ETPSSIFEFD AFPPDLLSRT SSRTQDLRLS 240 LQSLQGPTSK LESERTQHPI AQNHQNDHLY FSGTTPLGCF DGWSEQQPPP AMEISRLQRI 300 LHWNTVSADH SGSGDGGDGG VNGEFLYNSQ PTTSCLPPPS LPLPILQPLF GENQLVSQRG 360 PLQSSYTPSI RAWIDPSITF VDNQQHQIPT SIYQSSFPGL GFASGGFSRF LIPARIPGEE 420 EHDGISEKPS SASSNSRH

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MGEFSNQRPA KSSKTGIRSG GGGGGGGGEI VEVEGGRIVR SIGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI EFYDVQDRLG YDRPSKAVDW LIKKAKPAID KLRELPGWNP NVLDMSFDKS  120
ATQAEKNSEN KIPVAIHPPE GSTTRISDRR ANLVAGDGGI SECTMQNLPN TSTEENPNSD  180
NSSFLPPSFD SDSIVDTFKS FLPMTTTAAA ETPSSIFEFD AFPPDLLSRT SSRTQDLRLS  240
LQSLQGPTSK LESERTQHPI AQNHQNDHLY FSGTTPLGCF DGWSEQQPPP AMEISRLQRI  300
LHWNTVSADH SGSGDGGDGG VNGEFLYNSQ PTTSCLPPPS LPLPILQPLF GENQLVSQRG  360
PLQSSYTPSI RAWIDPSITF VDNQQHQIPT SIYQSSFPGL GFASGGFSRF LIPARIPGEE  420
EHDGISEKPS SASSNSRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-20	49	102	1	54	Putative transcription factor PCF6
5zkt_B	5e-20	49	102	1	54	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681862	0.0	LN681862.1 Cucumis melo genomic scaffold, anchoredscaffold00081.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463723.1	0.0	PREDICTED: transcription factor TCP4
TrEMBL	A0A1S3CJX5	0.0	A0A1S3CJX5_CUCME; transcription factor TCP4
STRING	XP_004163640.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	5e-75	TCP family protein