PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023297
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family STAT
Protein Properties Length: 753aa    MW: 84032.6 Da    PI: 5.5035
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023297genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT195.35.9e-612233431121
       STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypflea 100
                ldv+ll++ gqpv k++evvasL+ya+sg++veks+d+eapLL+sydGvef+s+drp+kll+GrasfklkisqLsskcdn+Lfri+f+ip+++ ypf+ea
  Cla023297 223 LDVMLLDSSGQPVLKELEVVASLIYAESGEAVEKSGDEEAPLLASYDGVEFASSDRPSKLLHGRASFKLKISQLSSKCDNKLFRIRFCIPSVEGYPFFEA 322
                8*************************************************************************************************** PP

       STAT 101 vskpirCisrsrntrsssltk 121
                +s+pirCisrsrntr+s+l+ 
  Cla023297 323 LSSPIRCISRSRNTRMSTLML 343
                ***************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2003.7E-610167IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133858.8E-725171No hitNo description
SuperFamilySSF498992.85E-926171IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.101.3E-7602692IPR000980SH2 domain
SuperFamilySSF555505.28E-8606671IPR000980SH2 domain
PROSITE profilePS5000110.82609691IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MGSEVNESDE YSLLKNLKLE IDGDDACFTV CFWVYLMNST TFPVSILQQV QLDSSGMTPF  60
LILSERNRLK IMPLTTLHKA DEGSSPGSSS SGNVVPHEYL DIDFPLEKWV HIGCEFSTNF  120
VRLHIDGKMV GEKPISSSPS EDTFPRGLGR IVLGNNGEDN SMQGYVHNAK VLPSVSLIRD  180
HYAEDLPVKL FIDNSSTMEI EEGSDGIWNI VGGKPSCRRN FSLDVMLLDS SGQPVLKELE  240
VVASLIYAES GEAVEKSGDE EAPLLASYDG VEFASSDRPS KLLHGRASFK LKISQLSSKC  300
DNKLFRIRFC IPSVEGYPFF EALSSPIRCI SRSRNTRMST LMLKRSTFHP LDGSRSSGLD  360
NGTSEHEHVS VDEEKPSLLL KRIKLGQDRP TPNDDPSSGQ PDEECNSHSF TANGAENTSL  420
TGPKNNGSRG ASPSDSGSTE ARHLALNRTT TNGNPISDVN IFKYCLAGLS ERSLLLKEIA  480
TSVSQEGILE FAEHVSLYSG CLHHRHQILM SRKLIEEGTQ VWNSISHNKH HVHWENVVFE  540
IEEHFMRISG CSSRSLTQQD FELLKRISGC QEYLAQENFE RMWCWLYPVA FTLSRQWINA  600
MWSSLSPKWI EGFITKEEAE LSLQSPTGLQ DPGTFILRFP TSRSWPHPDA GSLVVTYVGN  660
DYALHHRLLT LDRIFSSAEG EKNMRSLQDM LLAEPELSRL GRSCFGKNIY RQVGAIPEPR  720
FKSSACARTC TSETIISDEI TIFSQDISSL QQF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-169LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-169LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146076.20.0PREDICTED: uncharacterized protein LOC101219900
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A0A0L1Y60.0A0A0A0L1Y6_CUCSA; Uncharacterized protein
STRINGXP_004162113.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]