PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023197

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C3H

Protein Properties

Length: 965aa MW: 106231 Da PI: 6.4024

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023197	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	8.1e-06	562	582	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++ + G C+ Gd+CkF+H+ Cla023197 562 YCRHYVK-GRCHEGDKCKFSHD 582 6****.***********7 PP
2	zf-CCCH	17.8	5.9e-06	616	636	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f +G C++Gd+C F+H Cla023197 616 PCSNFVSNGSCPRGDTCMFSH 636 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.554	557	584	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-6	557	582	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0071	558	583	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.033	586	612	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.676	586	610	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.737	611	639	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.08	614	638	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-6	615	642	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-5	616	637	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MEDARIEAPK LVESKLLFPP HRRLSETYRT LVRILAPFCE NTDVSLATEF DPQQLRAAYS 60 GHMRQETVES SCQQVVEDSV REETTGDSAI EKVVVVEDGL GVNTLVDKCL HGSEVKMDFI 120 EDMPTVESDN VSDQRKTFEA KSEDNHCVHE GNCGNVVEAE DIVEGNRVLV DDSSCSNMRT 180 SNQTNGGNDQ ISPKKFPEEI VEHPQVMEEE DAKSIIQKLS GTVLSLDCHM IEEASKRKED 240 NQENILSIVD KGMQQLSENC PKELKSESIV CKPDLEMERS YVSSIEVMEV DNKEQCSENV 300 SGADPSYMDK EIPCGAYEQI KNSEDKAITV DYDTSKVEHK MLPEAMKVDK YMIENGDIEE 360 GEICGDSTNE ISEDPVVLTE KVVGIQISEE RMNRSNLPLI QANGEANKPV SLFFDKAVCA 420 SHENGEESKF KQNKSSSDAC RSIVSEKMVT STNGDQNDFM LEERGYTRKD SGTKKDVDSF 480 TACFSNQVLC SQVPKEHAIG RREIVSVEKE TGACKKKKRG SSEGRKERKK IQKRKKRAEK 540 NRKDGVKRLK LHTVTVPKPV VYCRHYVKGR CHEGDKCKFS HDTTPLTKST PCSYFARHSC 600 MKGGDCPFDH QLSKYPCSNF VSNGSCPRGD TCMFSHKILP QGSTSTPNLK TEPKPPVIPD 660 SLDTQKQLNI SGRLKQNLVT VPNYTGTSCN RTPLGGTLLK KMTGPPPIGI NFLSFGKSPN 720 SASQMKNDNV ECRNVLAQSG LCTVENSNEI SRKSQPNTAP KGVNFLSFGR TSLHSNREEL 780 ATPSSYNGDT IPFGNQIQAV SKTYDSNELL RKVQMTTPKQ TNFLSPIGNY ASNESVSSSS 840 NLKASSDLFV QNKGSVCDKH EGLSTVLSRL PGTPISSGQF SDSLASSMTK GTSNSAQKAL 900 LSTLAFAAKH DSFMNKGKSG AFPVLGNEGN KEGGNDNIHG SLKNDQAKAS KLLNFLLGIG 960 SKSNL

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MEDARIEAPK LVESKLLFPP HRRLSETYRT LVRILAPFCE NTDVSLATEF DPQQLRAAYS  60
GHMRQETVES SCQQVVEDSV REETTGDSAI EKVVVVEDGL GVNTLVDKCL HGSEVKMDFI  120
EDMPTVESDN VSDQRKTFEA KSEDNHCVHE GNCGNVVEAE DIVEGNRVLV DDSSCSNMRT  180
SNQTNGGNDQ ISPKKFPEEI VEHPQVMEEE DAKSIIQKLS GTVLSLDCHM IEEASKRKED  240
NQENILSIVD KGMQQLSENC PKELKSESIV CKPDLEMERS YVSSIEVMEV DNKEQCSENV  300
SGADPSYMDK EIPCGAYEQI KNSEDKAITV DYDTSKVEHK MLPEAMKVDK YMIENGDIEE  360
GEICGDSTNE ISEDPVVLTE KVVGIQISEE RMNRSNLPLI QANGEANKPV SLFFDKAVCA  420
SHENGEESKF KQNKSSSDAC RSIVSEKMVT STNGDQNDFM LEERGYTRKD SGTKKDVDSF  480
TACFSNQVLC SQVPKEHAIG RREIVSVEKE TGACKKKKRG SSEGRKERKK IQKRKKRAEK  540
NRKDGVKRLK LHTVTVPKPV VYCRHYVKGR CHEGDKCKFS HDTTPLTKST PCSYFARHSC  600
MKGGDCPFDH QLSKYPCSNF VSNGSCPRGD TCMFSHKILP QGSTSTPNLK TEPKPPVIPD  660
SLDTQKQLNI SGRLKQNLVT VPNYTGTSCN RTPLGGTLLK KMTGPPPIGI NFLSFGKSPN  720
SASQMKNDNV ECRNVLAQSG LCTVENSNEI SRKSQPNTAP KGVNFLSFGR TSLHSNREEL  780
ATPSSYNGDT IPFGNQIQAV SKTYDSNELL RKVQMTTPKQ TNFLSPIGNY ASNESVSSSS  840
NLKASSDLFV QNKGSVCDKH EGLSTVLSRL PGTPISSGQF SDSLASSMTK GTSNSAQKAL  900
LSTLAFAAKH DSFMNKGKSG AFPVLGNEGN KEGGNDNIHG SLKNDQAKAS KLLNFLLGIG  960
SKSNL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	516	536	KKRGSSEGRKERKKIQKRKKR
2	527	549	RKKIQKRKKRAEKNRKDGVKRLK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681867	0.0	LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653770.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
Refseq	XP_011653771.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
TrEMBL	A0A0A0L0H4	0.0	A0A0A0L0H4_CUCSA; Uncharacterized protein
STRING	XP_008444223.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6650	23	23