PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023135
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 363aa    MW: 39677.2 Da    PI: 8.2194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023135genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20179228255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Cla023135 179 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 228
                59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.11E-35178238No hitNo description
Gene3DG3DSA:3.30.730.105.8E-33179237IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-23179236IPR016177DNA-binding domain
SMARTSM003801.4E-40179242IPR001471AP2/ERF domain
PROSITE profilePS5103223.591179236IPR001471AP2/ERF domain
PRINTSPR003673.5E-11180191IPR001471AP2/ERF domain
PfamPF008471.7E-14180228IPR001471AP2/ERF domain
PRINTSPR003673.5E-11202218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAAAMDFYNE GPQTDHFGGE LMEAIVPFIK VASSSASSLS TNFPSSSSSS SPTPNLLPPY  60
SSSFNSHLNF SHSTPQQSSL YSNGCSTSMN SVFSDGFSNQ NLIGFEQPFT IGPHQLSSPQ  120
IPHSQTQFNL LQNQTPLAFA WGQQNHQPPS CYEQQTPSFL SPKPIPMKQV GSSSKPTKLY  180
RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD TAEEAALAYD KAAFKLRGDS ARLNFPNLKH  240
QGSCVEGEFG EYKPLHSSVA AKLQAICENL AKPQKQGKSK KPVTAAKKSR SQSCSTAGGT  300
AAVKVENSSS RAVTESDGSA ASSPLSDLTF PDFTELPWDQ NQAWENSMLE KYPSEIDWAS  360
ILP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22178236160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818670.0LN681867.1 Cucumis melo genomic scaffold, anchoredscaffold00013.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444109.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13-like
SwissprotQ8H1E46e-81RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1S3BAC80.0A0A1S3BAC8_CUCME; ethylene-responsive transcription factor RAP2-13-like
STRINGXP_008444109.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-66related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]