PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla023112 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 23884.6 Da PI: 6.3035 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.1e-18 | 35 | 83 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Cla023112 35 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 83 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-21 | 34 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-36 | 34 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.499 | 34 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 34 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 35 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.71E-33 | 35 | 93 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSTKEESQIS QHSSNNNQSK PNKRLHADSS KHPMYRGVRM RAWGKWVSEI REPRKKSRIW 60 LGTFPTPEMA ARAHDVAALS IKGNSAILNF PELAHSLPRP VSFAPRDVQA AAAKAAHMDP 120 NFLHYSPNSP VSTSPSSAAD DDSDELTEIV KLPTLGSNYD HFISNNEFVL MDSTEGWVYP 180 PPWLRTMEDC GYNTNNIIDD LGIGVGDSNC LWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 29 | 91 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681824 | 8e-83 | LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596. | |||
GenBank | LN713258 | 8e-83 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023535238.1 | 2e-98 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 3e-67 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0A0LHV3 | 9e-91 | A0A0A0LHV3_CUCSA; AP2 domain class transcription factor | ||||
STRING | XP_004136219.1 | 1e-91 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-66 | ERF family protein |
Publications ? help Back to Top | |||
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