PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla023107

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 815aa MW: 89710.6 Da PI: 6.3054

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla023107	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	39	97	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Cla023107 39 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 97 5679*****************************************************97 PP
2	START	104.5	1.7e-33	183	321	2	139
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e l+d + W ++++++++l+v+s+g g+++l +++l+ Cla023107 183 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAESLKDWPSWFRDCRAVDVLNVLSTGngGTIELLYMQLY 281 7899****************************************************.7777777777*************************** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.- CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppes 139 a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p s Cla023107 282 APTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGP-S 321 ***********************************99.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	25	No hit	No description
PROSITE profile	PS50071	15.613	34	98	IPR001356	Homeobox domain
SMART	SM00389	3.4E-15	36	102	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	38	101	IPR009057	Homeodomain-like
CDD	cd00086	3.57E-16	39	99	No hit	No description
Pfam	PF00046	1.6E-16	40	97	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-18	41	97	IPR009057	Homeodomain-like
CDD	cd14686	1.25E-6	91	130	No hit	No description
PROSITE profile	PS50848	13.675	173	337	IPR002913	START domain
SuperFamily	SSF55961	1.51E-20	175	328	No hit	No description
SMART	SM00234	1.2E-15	182	361	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	9.4E-10	182	318	IPR023393	START-like domain
Pfam	PF01852	1.5E-30	183	322	IPR002913	START domain
Pfam	PF08670	6.5E-50	674	814	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MPEKVFVVLL LWEFQVGMMA VTSACKDAAS KMSSLDNGKY VRYTPEQVEA LERLYYECPK 60 PSSMRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNRLLME 120 ENDRLQKQVS QLVYENSYFR QQTQNATLAT TDTSCESVVT SGQQNLTPPH PPKDASPAGL 180 LSIAEETLAE FLSKATGTAV EWVQMPGMKP GPDSIGIVAI SHGCTGVAAR ACGLVGLEPT 240 RVAESLKDWP SWFRDCRAVD VLNVLSTGNG GTIELLYMQL YAPTTLAPAR DFWLLRYTSV 300 LEDGSLVVCE RSLNNTQNGP SMPTVQNFPW SVPEVLRPLY KSSTLLAQKN TMAALRLLRQ 360 ISQEVSQPNV TGWGRRPAAL RALSQKLSRG FNEAVNGFTD EGWSLLENDG IDDVTLLVNM 420 SHGKTMMGAN ISYSNGFPSM SNAVLCAKAS MLLQNVTPAM LIRFLREHRS EWADSSIDAY 480 SAAAIKTGQC GLPGSHAGTF GGQFMEVVKF ENVGHYRDDM LMPGDIFLLQ LCNGVEENAV 540 GTSAELIFAP IDASFSDDAP ILPSGFRIIP LDSGMDASSP NRTLDLASAL DVGPAGNRTS 600 GDCAGQSGNS KSVMTIAFQF VFDVHLQDNV AAMARQYVRS IIASVQRVAL ALSPSNFGPH 660 ANLQTPAGAP EAQTLARWIS QSYRCYMGME LLKNEGRESV LKSLWHHSDA VMCCSLKALP 720 NFTFANQSGL DMLETTLVAL QDITLEKIFD DNGKKTLASE FPRIMQQGFL CLQGGVCLSS 780 MGRAVSYEKA VAWKVLNEEE NAHCICFMFM NWSFV

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MPEKVFVVLL LWEFQVGMMA VTSACKDAAS KMSSLDNGKY VRYTPEQVEA LERLYYECPK  60
PSSMRRQQLI RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNRLLME  120
ENDRLQKQVS QLVYENSYFR QQTQNATLAT TDTSCESVVT SGQQNLTPPH PPKDASPAGL  180
LSIAEETLAE FLSKATGTAV EWVQMPGMKP GPDSIGIVAI SHGCTGVAAR ACGLVGLEPT  240
RVAESLKDWP SWFRDCRAVD VLNVLSTGNG GTIELLYMQL YAPTTLAPAR DFWLLRYTSV  300
LEDGSLVVCE RSLNNTQNGP SMPTVQNFPW SVPEVLRPLY KSSTLLAQKN TMAALRLLRQ  360
ISQEVSQPNV TGWGRRPAAL RALSQKLSRG FNEAVNGFTD EGWSLLENDG IDDVTLLVNM  420
SHGKTMMGAN ISYSNGFPSM SNAVLCAKAS MLLQNVTPAM LIRFLREHRS EWADSSIDAY  480
SAAAIKTGQC GLPGSHAGTF GGQFMEVVKF ENVGHYRDDM LMPGDIFLLQ LCNGVEENAV  540
GTSAELIFAP IDASFSDDAP ILPSGFRIIP LDSGMDASSP NRTLDLASAL DVGPAGNRTS  600
GDCAGQSGNS KSVMTIAFQF VFDVHLQDNV AAMARQYVRS IIASVQRVAL ALSPSNFGPH  660
ANLQTPAGAP EAQTLARWIS QSYRCYMGME LLKNEGRESV LKSLWHHSDA VMCCSLKALP  720
NFTFANQSGL DMLETTLVAL QDITLEKIFD DNGKKTLASE FPRIMQQGFL CLQGGVCLSS  780
MGRAVSYEKA VAWKVLNEEE NAHCICFMFM NWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269\|PubMed:11402194, ECO:0000269\|PubMed:15598805}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165. {ECO:0000269\|PubMed:17237362, ECO:0000269\|PubMed:8575317}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004136224.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-8
Swissprot	Q39123	0.0	ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBL	A0A0A0LHU6	0.0	A0A0A0LHU6_CUCSA; Uncharacterized protein
STRING	XP_004136224.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1946	33	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32880.1	0.0	homeobox gene 8

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis. Planta, 2014. 239(5): p. 989-1001 [PMID:24488524] Baima S, et al. Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] Kakehi J, et al. Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana. PLoS ONE, 2015. 10(1): p. e0117309 [PMID:25625317] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Liu S, et al. Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis. Front Plant Sci, 2015. 6: p. 388 [PMID:26082787] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918] Yamazaki K, et al. Suppression of DELLA signaling induces procambial cell formation in culture. Plant J., 2018. 94(1): p. 48-59 [PMID:29383774]