PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023007
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 995aa    MW: 109748 Da    PI: 5.0897
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023007genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-173783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av  + g++Wk+Ia ++   Rt+ qc +rwqk+l
        Cla023007 37 KGQWTPEEDEILRQAVDHFKGKNWKKIAGYFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding64.81.7e-2089135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tIa +++ gR +kqc++rw+++l
        Cla023007  89 KGPWSKEEDEIIIELVNKYGPKKWSTIATHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding48.71.8e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
        Cla023007 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9643283IPR017930Myb domain
SMARTSM007171.9E-143685IPR001005SANT/Myb domain
PfamPF002491.1E-153783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-223891IPR009057Homeodomain-like
SuperFamilySSF466891.22E-153893IPR009057Homeodomain-like
CDDcd001676.66E-134083No hitNo description
PROSITE profilePS5129434.02284139IPR017930Myb domain
SuperFamilySSF466891.57E-3186182IPR009057Homeodomain-like
SMARTSM007171.3E-1988137IPR001005SANT/Myb domain
PfamPF002496.4E-1989135IPR001005SANT/Myb domain
CDDcd001674.06E-1791135No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2892138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-21139190IPR009057Homeodomain-like
SMARTSM007172.2E-15140188IPR001005SANT/Myb domain
PROSITE profilePS5129419.563140190IPR017930Myb domain
PfamPF002491.7E-13141184IPR001005SANT/Myb domain
CDDcd001674.50E-12143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MEGDKTISTP SDNPEARDQK IRALHGRTSG PTRRSTKGQW TPEEDEILRQ AVDHFKGKNW  60
KKIAGYFKDR TDVQCLHRWQ KVLNPDLVKG PWSKEEDEII IELVNKYGPK KWSTIATHLP  120
GRIGKQCRER WHNHLNPNIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLT QFQDPIPVGQ PNQIPVSSSK VLGSGNDSGL NGMDTEEISE  240
CSQDATVANS FMSDSACATL NTRKEFQLIE DLRLGKEQSS SPVSSSEPYY PPMEVNTCPM  300
AEFAQKVGHS LPPQEQNLLH DCRTASNRDQ CDYISSRQLI KEASRFQSIG NGMGESHGAG  360
DSARNSSMIK GAAASAEAEC MFISDDECCR VLFSDPKSDR CDLTSNLKEG PCISEMCDYE  420
VPVHSLGTPK VESNHTSAPQ LYNHPSANNV QEKNSSHQSG MLIPSMVPVN SDMILFGGTG  480
SNQLSVGALE HECITSQQNG FVYNGGTSKP SYFDVADNPE IQEQPGGSED LPKSIFVNTF  540
ATAAADGTGT CTRLDETTKQ NDEHQESGAL CYEPPRFPSL DVPFFSCDLI QSGSEMQEYS  600
PLGIRQLMMS SLNSVTPFRL WDSPSRDTSP DVVLKTAAKT FTSTPSILKK RHHDLMSPLS  660
ERRIDKKLET DMTSSLTENF SRLDVVFNDG SDKASILSPS NLKKSIENSA EDKENMYRTF  720
EEREEKKDDG NESPVVIVSE NGFPKSCSQD YTKQGTVDTE MICVQSAAEI VPPGVLAEHD  780
ANDLLLHSVD WKALNSSTGI KKRHYLSKLE DASNADDVSN VPTCELPVTS SAFLEKIDST  840
RSQTTVTVIA SLSGPGETPF KRSIESPSAW MSPWFFNSFL PGPRIDTEIS IEDIGYFSSP  900
KERSLDAIGL MKQVSERTAA ACANAHEVLG NETPETLLKG TRMKHLHCDE TVLAECRVLD  960
FSECGSPGKV GTENVKTTAA TTLASPPSYL LKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652549.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A0A0LHI70.0A0A0A0LHI7_CUCSA; Uncharacterized protein
STRINGXP_008466237.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein