PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022939

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 517aa MW: 53272.4 Da PI: 7.5207

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022939	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.6	7.5e-41	146	281	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ s++ Cla022939 146 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISIRSSGSTLSAPpsksaphsfhgalal 245 89****************************************************************8886555555555543333444555666666666 PP TCP 89 ............kaaksaa.kskksqksaasalnlak 112 + a+ +++++q++++++lnl+ Cla022939 246 ahhphaydegfaH-AALLGfHQHQQQQQQQHQLNLMT 281 6666677776642.33333355555555555566655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-40	148	279	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.496	149	203	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MELTDMQQSN KQQQQQQQQH HQLHHQNQNQ KRGSSQSQSQ SPSPSPSPSP QQHLHGVPFD 60 GRSPVSAAAA TGGGGGGGAP PFMASISSLV SLPPPSSSNS SVSSASNAAA PPPHLDASLV 120 IATRSDTTTT TTDPSPRSAS NNNALKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL 180 GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI RSSGSTLSAP PSKSAPHSFH 240 GALALAHHPH AYDEGFAHAA LLGFHQHQQQ QQQQHQLNLM TADQIGDTLP TGGGGGDSTD 300 NYMRKRFRED LFKEDTQSPG ESSGGAGSPK AMKSDLQLEK QQPPSASSSG LLRPGAAMWA 360 VAAPGPSSGA SNTFWMLPVT TGSGGGNVGS SGGGGGGGVG GMEAHQMWPF STSGNTLQAP 420 LHLMPRFNIP EIQAAAAAAG GRGGGQLQLG SMLMQQGGGG GGGLGVTESN LGMLAALNAA 480 YSRGGGFNIN SDHNHPLENH PHTHTTDSGD EAPNTSQ

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MELTDMQQSN KQQQQQQQQH HQLHHQNQNQ KRGSSQSQSQ SPSPSPSPSP QQHLHGVPFD  60
GRSPVSAAAA TGGGGGGGAP PFMASISSLV SLPPPSSSNS SVSSASNAAA PPPHLDASLV  120
IATRSDTTTT TTDPSPRSAS NNNALKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL  180
GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI RSSGSTLSAP PSKSAPHSFH  240
GALALAHHPH AYDEGFAHAA LLGFHQHQQQ QQQQHQLNLM TADQIGDTLP TGGGGGDSTD  300
NYMRKRFRED LFKEDTQSPG ESSGGAGSPK AMKSDLQLEK QQPPSASSSG LLRPGAAMWA  360
VAAPGPSSGA SNTFWMLPVT TGSGGGNVGS SGGGGGGGVG GMEAHQMWPF STSGNTLQAP  420
LHLMPRFNIP EIQAAAAAAG GRGGGQLQLG SMLMQQGGGG GGGLGVTESN LGMLAALNAA  480
YSRGGGFNIN SDHNHPLENH PHTHTTDSGD EAPNTSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023542114.1	0.0	transcription factor TCP8
Swissprot	Q9C518	5e-81	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A0A0KPT3	1e-171	A0A0A0KPT3_CUCSA; Uncharacterized protein
STRING	XP_004135523.1	1e-175	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-50	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]