PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022908

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NF-YC

Protein Properties

Length: 266aa MW: 29640.6 Da PI: 4.5779

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022908	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.6	5.4e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r Cla022908 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSR 69 899***************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.6E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.39E-19	1	70	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.3E-18	1	69	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KHCVQSYSVF 60 DFLRDIVSRV PDYGHGHSDG AVDDRKRRKP LGDEGNDFDE LKKSKMHDMS HGSTGRGRGR 120 GRGRGRGRPA RTAERDNFQP NPDIDPCTSI ENRNKNPNPD VHMEHHVEPS ETPKEVGEAN 180 QAIQNFDLNV DVITSEDSKS VPPPPAVSDA PVEPAAPTTT ESETKTADEF PAWPLSDVDK 240 MAIDPLQYAH LSSRVDEEEE DYDEEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-15	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	126	RGRGRGRGRG
2	117	127	RGRGRGRGRGR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-163	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-163	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004147086.1	1e-162	PREDICTED: dr1-associated corepressor
Refseq	XP_008445943.1	1e-162	PREDICTED: dr1-associated corepressor
TrEMBL	A0A0A0KPQ2	1e-160	A0A0A0KPQ2_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3BDV9	1e-160	A0A1S3BDV9_CUCME; dr1-associated corepressor
STRING	XP_008445943.1	1e-161	(Cucumis melo)
STRING	XP_004147086.1	1e-161	(Cucumis sativus)
STRING	XP_004165516.1	1e-161	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	9e-56	nuclear factor Y, subunit C11