PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022852
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 294aa    MW: 32591 Da    PI: 6.8591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022852genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+ +++++G+  +W + ++++g++R++k+c++rw++yl
        Cla022852 14 KGPWSPEEDEKLKAYIQLHGTAgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     79******************99*************************97 PP
2Myb_DNA-binding39.51.3e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd+++  ++   G++ W+ Ia+ ++ gRt++++k++w++
        Cla022852  69 GGFSEEEDKIICSLFISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.337966IPR017930Myb domain
SuperFamilySSF466891.08E-2512109IPR009057Homeodomain-like
SMARTSM007174.2E-131364IPR001005SANT/Myb domain
PfamPF002493.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241569IPR009057Homeodomain-like
CDDcd001671.23E-91662No hitNo description
SMARTSM007173.2E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129415.99367117IPR017930Myb domain
PfamPF002493.3E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2270117IPR009057Homeodomain-like
CDDcd001679.79E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRAPCCDKE KVKKGPWSPE EDEKLKAYIQ LHGTAGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDKIIC SLFISIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKKLLGT  120
RKQYFSNNKL SSHSNSTDTA QALTNSAIEK LQLQMQLQAL QSSFSFNNVS TLWPPMCIEE  180
VKIAQTAQPP NENDVDGACC SVATPLLEGC AVDCTSIVTG KSPVGSSPTE LEDGGGREVE  240
CVKEMDGSSK ESLYWWSNDV DAKSAVATKL WDTASVDLQF EGIFKDFEQL GYSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818475e-54LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132595e-54LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452158.11e-157PREDICTED: transcription factor MYB36
SwissprotQ9FKL21e-88MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1S3BTZ91e-155A0A1S3BTZ9_CUCME; transcription factor MYB36
STRINGXP_008452158.11e-156(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]