PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022742
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 334aa    MW: 37142.2 Da    PI: 7.3615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022742genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-1965114255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa+a++ a+++++g
  Cla022742  65 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAARAYDCAARSMRG 114
                59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.8465122IPR001471AP2/ERF domain
PfamPF008471.1E-1265114IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2165122IPR016177DNA-binding domain
CDDcd000181.97E-3065121No hitNo description
SMARTSM003801.0E-3365128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3065121IPR001471AP2/ERF domain
PRINTSPR003673.7E-106677IPR001471AP2/ERF domain
PRINTSPR003673.7E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEPDSFRRVN GLAIDNNTNH FLDYQMKCNA TSPSPSPSPT PTAAAATTSS LKRTLRDHNS  60
SGTMRYRGVR RRPWGRYAAE IRDPQSKERR WLGTFDTAEE AARAYDCAAR SMRGLKARTN  120
FVYPSSPPAT HSLSSDDYLI PRFNFPKHPL PRLNSSNWPI FSTPSRGPDF LWSGAHRINT  180
ASPTLDMLLL RDFLNFPSSS SKPPSSINNT KLTPPPPPPP PPPPPNVTEN YSSEFLPKDS  240
PDSGLLEEVI HGFFPKPHHS NSNTNSDQSA DDCFKNANFS GHSDLLDYQL AADTFNTAFN  300
QEACDRLFGD EVGHAHNFIL DDLLTAFPPK LQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20651211471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-158LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-158LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143060.11e-140PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A0A0LMT01e-139A0A0A0LMT0_CUCSA; AP2/ERF domain-containing transcription factor
STRINGXP_004143060.11e-139(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-17DORNROSCHEN-like