PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022718
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ARR-B
Protein Properties Length: 584aa    MW: 66185.9 Da    PI: 5.4111
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022718genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24198251155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Cla022718 198 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 251
                68*******************.9*******************************8 PP
2Response_reg82.41.4e-27191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  ++eal ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
     Cla022718  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALSLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 113
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
     Cla022718 114 DYLLKPIRMKELRN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1461520IPR017053Response regulator B-type, plant
SuperFamilySSF521727.97E-3616141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-4416140No hitNo description
SMARTSM004483.9E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.65718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.94E-3020133No hitNo description
SuperFamilySSF466892.15E-17196255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-28196256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-21198251IPR006447Myb domain, plants
PfamPF002491.8E-7200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MENGFSSPRS DAFPIGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCCLAR EALSLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVLRKKIQEG RDIEGHDVIE GIHILRNVAD RYDDSQFLRG EELFSVRKRK  180
DIDKHEDKDF CDTSSTKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE  240
NVASHLQKYR LYLSRLQKEN DPKACFVVGM KHTDLCSKDG DGNFGLRSSL AVPQNDVTNS  300
SFSFSGDNFL LQNVDSIGCE VDRKRVVQEH TSEPKRAAAR SVPEPIKSRC TQMKFNNSIH  360
SVEPEGKFAA FDPSNRSCYP WVEAPEIKFK QESKPLVHLE GDFNQFPPTV PPHQVQMDPL  420
QSISSISSGR SATEKDIANS IESKPPYSED CSQQMVHLNL PKTPTDSFSG KAKSFNEMND  480
HFDPNSTTTA PMGKNQNFNL SCISTDLGSG LPFATIDEDL QGYLLQDGCY PKDLEHQIIE  540
FPDYGDPGIF TEVPTHLYDA MRFGYDYSYD PTEYPVIDEG LFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18194256163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444405.10.0PREDICTED: two-component response regulator ARR11
TrEMBLA0A1S3BB230.0A0A1S3BB23_CUCME; Two-component response regulator
STRINGXP_008444405.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-130response regulator 11