PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022646
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 651aa    MW: 69430.2 Da    PI: 7.6765
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022646genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC771.9e-24244288145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cla022646 244 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 288
                79****************************************985 PP
2QLQ62.41.2e-21175210237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                +FT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k
  Cla022646 175 PFTPSQWMELEHQALIYKYITANVPVPSNLLIPIRK 210
                9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-12174210IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.178175210IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-16175209IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663244288IPR014977WRC domain
PfamPF088797.9E-21245287IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MDFGVVGLDG VVVGSSDTSG FSSLAASSDA ETKQKWYESG CGFIHKQERS ASVAAAEDED  60
DDEDLRTSKL LKTSDPLSSS SSSSSKGLLF PHRHSASLLR SNSPFFLSDS NQHHHQMLCF  120
SSPKTESFPL DKTSSLSPVS PNFYHSSAPR NPGCNYGGLN GGSMHGGAFI GVRAPFTPSQ  180
WMELEHQALI YKYITANVPV PSNLLIPIRK ALESAGFSTF SGGFLRPGTV GWGSFNMGFS  240
NSSDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEGQA GHSHSVAGAS  300
NITTAATATK LISSSASTAA VSCNGSPNNL SFANQHFKNL HRAGSHPPPS SAAAQINRML  360
ITNKENGGIG LNDSTTTSGL SVLSPSIDIK QSKQLAFAIQ KQQNPFEEST RGAEFGLVSS  420
SFLLGSSQKT SSLMNYRGFN PSEGITSTQE AAETQQSLRQ FFNNWPKNQS DSSSVSWSNS  480
NLDHQSDRTQ LSISIPMATS DFRSSTSSPS NEKLTLSPLK SSQELDPIQM GLGVGNVMDE  540
PNNRQANWIP ISWESSMGGP LGEVLHSTNN NGGESKSSSI LNLMTEGWDN SPSLGSSPTG  600
VLQKTAFGSF SNSSTGSSPR TENNKTHEGG GGGSSQCSDR FVNSSSSLPS V
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444523.10.0PREDICTED: growth-regulating factor 6-like
TrEMBLA0A1S3BBC20.0A0A1S3BBC2_CUCME; growth-regulating factor 6-like
STRINGXP_004171939.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-81growth-regulating factor 1