PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla022591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 16339.4 Da PI: 9.7683 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 23 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Cla022591 23 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPLAAARAYDTAVFYLRG 72 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.97E-21 | 23 | 81 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.207 | 23 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.8E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.29E-27 | 24 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 24 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-11 | 24 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-12 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-12 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MEESVETTVS DKRKQQAGRQ EKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYTTPLAAA 60 RAYDTAVFYL RGPSARLNFP DLILQDMDHQ LLDVSPSSIR KRAIEVGARV DAAAHQTSLR 120 QSKPISDKPD LNQFPDPESS DED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-15 | 11 | 80 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-154 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-154 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008444599.1 | 2e-96 | PREDICTED: ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 1e-51 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A1S3BAR1 | 4e-95 | A0A1S3BAR1_CUCME; ethylene-responsive transcription factor RAP2-1 | ||||
STRING | XP_008444599.1 | 7e-96 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G46768.1 | 5e-54 | related to AP2 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|