PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022556
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 214aa    MW: 24068.8 Da    PI: 10.0181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022556genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-14128206286
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                +k +++s+v+   +l lp +f++ h  +k+    +tl de+g ++ + +  rk++    +++GWk F  a++L +gD vvF++++
  Cla022556 128 IKSMVRSHVSGCFWLGLPAHFCKMHL-PKND-GVMTLIDEDGDEYPIIYLARKTG----FSGGWKAFSIAHKLADGDAVVFQHIK 206
                6999******************9993.3333.38***************555555....99*********************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-16121212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-21121212IPR015300DNA-binding pseudobarrel domain
CDDcd100173.66E-23125208No hitNo description
SMARTSM010194.6E-17127213IPR003340B3 DNA binding domain
PROSITE profilePS5086310.165127214IPR003340B3 DNA binding domain
PfamPF023622.3E-11128206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGISNLSYEE CRRKRVEENK KRMEALNLPL LSQALLDSSP SKSSPSKQVK ARVMQKQLVV  60
VRRSSRVAKQ SAPVYAEVLV DRLAIPRRIS RARDFSDQFY ASDEARKNAF ERAQELQSGL  120
EPNYPICIKS MVRSHVSGCF WLGLPAHFCK MHLPKNDGVM TLIDEDGDEY PIIYLARKTG  180
FSGGWKAFSI AHKLADGDAV VFQHIKPTAC KVIG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818234e-97LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132574e-97LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022144315.11e-126B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ44e-61Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0A0LKX31e-130A0A0A0LKX3_CUCSA; Uncharacterized protein
STRINGXP_004160008.11e-136(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-53B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]