PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022489
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 305aa    MW: 33020.7 Da    PI: 7.2775
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022489genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.3e-3276132360
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  +vrY+eClkNhAas+Gg+ +DGCgEfmps ge+gt +alkCaAC+CHRnFHR+e + e
    Cla022489  76 GVRYRECLKNHAASVGGNIYDGCGEFMPS-GEDGTLEALKCAACECHRNFHRKEIDGE 132
                  79**************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2377130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.5E-3077129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-3078129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.48779128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.6E-31211284IPR009057Homeodomain-like
SuperFamilySSF466892.79E-20214284IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-28222279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPGAPVGAGG YSHIFGETSS ERRIDSIHNG SHHHIQTDHH DGDRVPASGE NVGCGAGGGN  60
FSSGGGRSKV RGAVSGVRYR ECLKNHAASV GGNIYDGCGE FMPSGEDGTL EALKCAACEC  120
HRNFHRKEID GESQLNISPN YRRGLMLNHL QLPPPLPSPS ALHGHHKFSM ALNLHSSPTA  180
PIIAPMNVAF AGGGGNESSS EDLNVFQSNA EVMPPSSFSL SKKRFRTKFT QEQKDRMLEF  240
AEKVGWRIQK QDEEEVERFC TEVGVKRQVL KVWMHNNKNT VKKQNENHEP EIAGTGAGAG  300
ITNES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-252212801675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649626.10.0PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9FRL54e-67ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A0A0LRH90.0A0A0A0LRH9_CUCSA; Uncharacterized protein
STRINGXP_004165400.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-61homeobox protein 24