PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022488
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 93aa    MW: 10446.7 Da    PI: 7.6754
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022488genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.4e-101558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +++ da  +++ +   +W ++ar +g g+t++++k ++
        Cla022488 15 SWTLKQNKKFEDALVLYPEDtpdRWQKVARAVG-GKTAEEVKRHY 58
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.284862IPR017877Myb-like domain
SMARTSM007173.2E-71264IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-131470IPR009057Homeodomain-like
PfamPF002493.5E-71558IPR001005SANT/Myb domain
CDDcd001673.19E-61658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASSSFKSSG SSSSSWTLKQ NKKFEDALVL YPEDTPDRWQ KVARAVGGKT AEEVKRHYDI  60
LLQDLMHIES GKVPLPNYKP IVSNGSEYGD EQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-28893386RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-116LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-116LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022961874.11e-52protein RADIALIS-like 4
RefseqXP_022996692.11e-52protein RADIALIS-like 4
RefseqXP_023545905.11e-52protein RADIALIS-like 4
SwissprotQ1A1733e-34RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3BBS29e-50A0A1S3BBS2_CUCME; protein RADIALIS-like 4
STRINGXP_008444724.12e-50(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-35RAD-like 6