PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022445
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 230aa    MW: 25821.1 Da    PI: 10.7035
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022445genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.4e-10109207281
                EEE-..-HHHHT.T-EE--HHH.HTT................---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEE CS
         B3   2 fkvltpsdvlks.grlvlpkkfaeeh................ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvv 81 
                +k+l  sdv+++ grl+lp k +++                 ++k ++++++ + d+  r+ +++l+ +k +g+  y l ++W++Fv +ngL++gDf+ 
  Cla022445 109 EKKLEESDVNRNhGRLSLPAKKVRREflreeerkvldeengnKKKMKNGIEVGIVDSVLRESSMRLKKWKIGGGkaYCLMNNWNSFVVENGLRSGDFIQ 207
                678889999988799*******999967666666555554432233355555555555599999997777666667*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037548.2E-2199195IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.103.7E-15105212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-14107213IPR015300DNA-binding pseudobarrel domain
CDDcd100176.43E-9108223No hitNo description
PROSITE profilePS508639.46166227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGVGMIQQHL PLGFINGVHI PRRRRSCSVE SKPEDDGASI STMEAATIMI AMANGGFCKR  60
KRKKSPTGKQ RKKSRGKEME LGKSPAEMPA AMRDGIVGKG GYEIELVIEK KLEESDVNRN  120
HGRLSLPAKK VRREFLREEE RKVLDEENGN KKKMKNGIEV GIVDSVLRES SMRLKKWKIG  180
GGKAYCLMNN WNSFVVENGL RSGDFIQLWS FRIINSGRLC FAIAKLSNLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRKK
25972RKRKKSPTGKQRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445569.13e-87PREDICTED: putative B3 domain-containing protein At3g49610
TrEMBLA0A0A0LRL43e-91A0A0A0LRL4_CUCSA; Uncharacterized protein
STRINGXP_008445569.11e-86(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.14e-11B3 family protein