PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022347
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 459aa    MW: 51000.4 Da    PI: 6.1047
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022347genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.6e-084054382154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Cla022347 405 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 438
                469*****************************87 PP
2ELK28.82.8e-10359380122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Cla022347 359 ELKHELKNGYKEKIVDIREEIL 380
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-18191235IPR005540KNOX1
PfamPF037901.2E-16193233IPR005540KNOX1
SMARTSM012561.3E-25247302IPR005541KNOX2
PfamPF037911.2E-18253301IPR005541KNOX2
PfamPF037892.5E-6359380IPR005539ELK domain
PROSITE profilePS512139.69359379IPR005539ELK domain
SMARTSM011887.4E-4359380IPR005539ELK domain
PROSITE profilePS5007111.677379442IPR001356Homeobox domain
SuperFamilySSF466898.98E-16381445IPR009057Homeodomain-like
SMARTSM003895.9E-11381446IPR001356Homeobox domain
CDDcd000866.56E-12382443No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25386443IPR009057Homeodomain-like
PfamPF059201.1E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MAFRNQLSRD LPLHYANQPQ QQQPERPLSD NTLRSILSDQ LADHSPGGDG SKSEHPLQST  60
PNWLNSALLR NQTPHSHYSG ETTTTAADNI NTDFLNLHTT APNSVVSHPS GQWLSRPILH  120
RNQSDVIDDV TDAADAMIGA TATLSRESDD LKNNSSGGGG EGVNNSDDVA VESDGNGGAH  180
GGEAAMNWQN ARFKAEILAH PLYEQLLSAH VACLRIATPV DQLPRIDSQL SRSQNVAAKY  240
SSLGNGSQPI VSNGKELDQF MTHYVLLLCS FKEQLQQHVR VHAMEAVYAC WEIEQSLQSL  300
TGVSPGEGTG ATMSDDDEDQ IDSDANLFDG SLEGHDAMGF GPLIPTESER SLMERVRHEL  360
KHELKNGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKAKLVQE  420
TGLQLKQINN WFINQRKRNW HTNPSTSTTL KTKRKRYSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435455RKRNWHTNPSTSTTLKTKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023546828.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3BC760.0A0A1S3BC76_CUCME; LOW QUALITY PROTEIN: homeobox protein knotted-1-like 3
STRINGXP_004138713.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-165KNOTTED1-like homeobox gene 3