PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022231

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 351aa MW: 39435.3 Da PI: 8.4249

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022231	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.1e-55	27	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhP+deel+++yL +k+++ +++ ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++el Cla022231 27 LPPGFRFHPSDEELITFYLLNKISDANFTG-RAITDVDLNKFEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSnTSEL 125 79***********************999.89***********99999************************************9867788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykgrap+gekt+Wvmheyrl Cla022231 126 VGMKKTLVFYKGRAPRGEKTNWVMHEYRL 154 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-64	25	175	IPR003441	NAC domain
PROSITE profile	PS51005	61.115	27	175	IPR003441	NAC domain
Pfam	PF02365	4.0E-28	28	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MTESDHHHRR HHQDTHAQDE EDKDQTLPPG FRFHPSDEEL ITFYLLNKIS DANFTGRAIT 60 DVDLNKFEPW ELPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEIFNS 120 NTSELVGMKK TLVFYKGRAP RGEKTNWVMH EYRLHSKTAF RTAKDEWVVC RVFQKSPGAK 180 KYPPNQSRAV NPYVNLEIPP SLLPPPIMQL GDPAAQYSYG RNYITSTELA ELNRVLRASG 240 GSGGSGGSTH GINLSMQPQF NYPTTGGCFT ISGLNLNLGG AVSVSQPVLR PMPPPVATTT 300 IGQDIASSVM ASSIAPETAY GAEINNNANV PSNRFMNMDH CMDLENYWHT W

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MTESDHHHRR HHQDTHAQDE EDKDQTLPPG FRFHPSDEEL ITFYLLNKIS DANFTGRAIT  60
DVDLNKFEPW ELPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEIFNS  120
NTSELVGMKK TLVFYKGRAP RGEKTNWVMH EYRLHSKTAF RTAKDEWVVC RVFQKSPGAK  180
KYPPNQSRAV NPYVNLEIPP SLLPPPIMQL GDPAAQYSYG RNYITSTELA ELNRVLRASG  240
GSGGSGGSTH GINLSMQPQF NYPTTGGCFT ISGLNLNLGG AVSVSQPVLR PMPPPVATTT  300
IGQDIASSVM ASSIAPETAY GAEINNNANV PSNRFMNMDH CMDLENYWHT W

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-57	26	181	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-57	26	181	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-57	26	181	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-57	26	181	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-57	26	181	19	174	NAC domain-containing protein 19
3swm_B	8e-57	26	181	19	174	NAC domain-containing protein 19
3swm_C	8e-57	26	181	19	174	NAC domain-containing protein 19
3swm_D	8e-57	26	181	19	174	NAC domain-containing protein 19
3swp_A	8e-57	26	181	19	174	NAC domain-containing protein 19
3swp_B	8e-57	26	181	19	174	NAC domain-containing protein 19
3swp_C	8e-57	26	181	19	174	NAC domain-containing protein 19
3swp_D	8e-57	26	181	19	174	NAC domain-containing protein 19
4dul_A	7e-57	26	181	16	171	NAC domain-containing protein 19
4dul_B	7e-57	26	181	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-153	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-153	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138783.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0A0LS52	0.0	A0A0A0LS52_CUCSA; Uncharacterized protein
STRING	XP_004138783.1	0.0	(Cucumis sativus)
STRING	XP_004160780.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5073	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-108	NAC domain containing protein 38