PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022147
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 296aa    MW: 31975.4 Da    PI: 6.7621
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022147genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16206242135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nCg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Cla022147 206 CTNCGISSmaTPMMRRGPSGPRSLCNACGLFWANRGT 242
                *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.1E-1171106IPR010399Tify domain
PROSITE profilePS5132014.21771106IPR010399Tify domain
PfamPF062001.4E-1174105IPR010399Tify domain
PROSITE profilePS5101712.372138180IPR010402CCT domain
PfamPF062031.9E-15138180IPR010402CCT domain
PROSITE profilePS5011411.002200259IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12200250No hitNo description
SMARTSM004012.7E-15200253IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-16204247IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.57E-15205252No hitNo description
PfamPF003203.7E-14206242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440206233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYARAQPLTM GDQIASVPDC GDSGEPLDNR LVRYGAHSLE DGGGVGGMIE DLNPDAVYAS  60
AGDGSDLAVQ RNDGSSQLTL SFRGQVYLFD AVSPEKVQAV LLLLGGCELS SGQQSVDLVN  120
QNQRNAVDFP GRSSQPQRAA SLNRFRQKRK ERCYDKKVRY SVRQEVALRM QRNKGQFTSS  180
KKPDGSYSHG SVSELGQDES PPETSCTNCG ISSMATPMMR RGPSGPRSLC NACGLFWANR  240
GTLRDLSKRS QDHPVTPAEQ CESDGGKDLD CRHGNHAPSN LVSFSNGDNS ALMAEH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818233e-86LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132573e-86LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022997231.10.0GATA transcription factor 25-like
SwissprotQ9LRH62e-87GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A1S3BBG80.0A0A1S3BBG8_CUCME; GATA transcription factor 25
STRINGXP_008444911.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.37e-83GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]