PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022146
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 358aa    MW: 38892 Da    PI: 4.7342
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022146genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75e-16210246135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Cla022146 210 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 246
                *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94271106IPR010399Tify domain
SMARTSM009794.2E-771106IPR010399Tify domain
PfamPF062003.6E-1074105IPR010399Tify domain
PROSITE profilePS5101712.65139181IPR010402CCT domain
PfamPF062031.0E-14139180IPR010402CCT domain
SMARTSM004014.9E-8204257IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.524204252IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.47E-11205254No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14208251IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.15E-16209253No hitNo description
PfamPF003207.0E-14210246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFQEHVQV STMMGDDDGE YEDGGGGGGG GGGGGGGDVM DDVEEAHMTS  60
VSVANHGGLV MASRTSELTL SFEGEVYVFP AVTPEKVQAV LLLLGGRDVP TGVPTMEVPY  120
DHNNRGMVDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YTVRKEVAQR MHRKNGQFAS  180
LKESSGASSW ESAHSCLQDG TRSETVLRKC QHCGVSENNT PAMRRGPAGP RTLCNACGLM  240
WANKGTLRDL SKGGRNVSLD HMEPETPMDV KPTIMEGEFS GIQDEHGTPE DPSKTMTEGS  300
SNPSIDPDEE DINETTGDLT NSLRMRTVNH STNDDEQEPL VELANPSDTD IDIPTNFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133DTPKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-101LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-101LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022131842.10.0GATA transcription factor 24-like
RefseqXP_022131843.10.0GATA transcription factor 24-like
TrEMBLA0A1S3BAZ60.0A0A1S3BAZ6_CUCME; GATA transcription factor 24-like isoform X1
STRINGXP_008444908.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-67ZIM-like 1