PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022119
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 310aa    MW: 35078.5 Da    PI: 6.2583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022119genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13116167155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cla022119 116 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YVQRGDQASIIGGAINFVKELE 167
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.87E-14114171No hitNo description
SuperFamilySSF474597.33E-17115183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-14115171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MALETVVYPQ DTFSYVCRDF CSYGGGTWGT YDYGFQLEEQ KAFLGVIENQ TEDQKFTANW  60
EASPEECSIN QPLPGGPIYP PVEVEPTPPP PPQPTTGRRK RRRTRSTKNK EEIENQRMTH  120
IAVERNRRKQ MNEYLAVLRS LMPSSYVQRG DQASIIGGAI NFVKELEQQL QFIKVHKEQT  180
GTSPFADFFS FPQYSTRATT QSKNNNNSPH DSSIAHTQWP AGDIEVTMVD THANLKILSQ  240
KRPRQLLKMV AGFQSLRLTI LHLNVTTSDQ MVLYSLSIKV EEGCQLNTVD EIAAAVNQIL  300
LSIQEEAVFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198102RKRRR
298103RKRRRT
3116127RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-168LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-168LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152621.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T43e-95BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A0LLQ60.0A0A0A0LLQ6_CUCSA; Uncharacterized protein
STRINGXP_008444872.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]