PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022056
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 333aa    MW: 37294 Da    PI: 9.6369
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022056genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.9e-104788445
               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cla022056 47 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 88
               6889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.2E-83891No hitNo description
SMARTSM003381.1E-844107IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154690IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.44E-74891No hitNo description
PfamPF001705.0E-74888IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605166IPR004827Basic-leucine zipper domain
PfamPF141444.4E-32130205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MATEGSPRTD ISTDGDTDEK SRRPDRGQLT LTMASDSSDR SKDKTDQKTL RRLAQNREAA  60
RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISS SGDQTHSMSG NGAMAFDVEY  120
ARWLEDHNRQ LNELRSAVNS HASDPELRIV VDGILVHYDE LFRLKGNAAK ADVFHLLSGM  180
WKTPAERCFL WLGGFRSSEL LKLLVNQLEP LTEQQLVGIT NLQQSSQQAE DALSQGMEAL  240
QQSLAETLSS GALGSSGSSG NVANYMGQMA MAMGKLGTLE GFIRQADNLR QQTLQQMHRI  300
LTTRQSARAL LAIHDYFSRL RALSSLWLAR PRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-122LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-122LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445387.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445388.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445389.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445390.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445393.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445395.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445396.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_008445397.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_016900012.10.0PREDICTED: transcription factor TGA2-like
RefseqXP_016900013.10.0PREDICTED: transcription factor TGA2-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1S3BCK90.0A0A1S3BCK9_CUCME; transcription factor TGA2-like
STRINGXP_008445387.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-153TGACG motif-binding factor 6