PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021993
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YC
Protein Properties Length: 140aa    MW: 15794.1 Da    PI: 9.7036
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021993genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.64.2e-164911197
      NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97
               e++ +  + e+P  r+kki+k d+d+ ++ +ea  l+s a elf+  l+ +s   a e+kr+t+k   i  a +r   i dfl+d  p
  Cla021993  4 EETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHrSISDFLLDSLP 91
               5566667889***********************************************************98877652789*****988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-201175IPR009072Histone-fold
SuperFamilySSF471132.85E-171291IPR009072Histone-fold
PfamPF008081.2E-191375IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEEEETGEAI RPEFPTGRVK KIMKLDKDIG KVNSEALFLV SCATELFLKL LAEKSAEVAA  60
EKKRKTVKLE HIRIAAKRHR SISDFLLDSL PLPSQRSDAP AKDENRTRTV VDKVAPEGTR  120
RIDDFFRRPA KTTSAETNES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-171LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-171LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445504.15e-89PREDICTED: dr1-associated corepressor
TrEMBLA0A1S3BDL41e-87A0A1S3BDL4_CUCME; dr1-associated corepressor
STRINGXP_008445504.12e-88(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.16e-32nuclear factor Y, subunit C13