PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021868
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 334aa    MW: 36337.8 Da    PI: 5.7067
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021868genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.38.9e-10231279553
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+
  Cla021868 231 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQ 279
                9*****************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.6E-15227291IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898229292IPR004827Basic-leucine zipper domain
PfamPF001706.9E-9231279IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11231282No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-8231285No hitNo description
CDDcd147031.70E-25232281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEKDKPQGYS GGFPTPSSRY SVLSPTGSIF NGKSEATSSS MLLPPMPSGA LSDSGQFGRE  60
RPTDSNRFSH DISQMPDNPP RNIGHRRAHS EILTLPDDIC FDNDLGVIGS ADGPSFSDDT  120
EEDLLSMYLD MDKFNSSTAT SAIQVGESSS AVGDAISTPT PAIGAATSKD DTAVGLKERP  180
RVRHQHSQSM DGLTTIKPEM LVSGSEEASA ADSKKAMSAT KLAELALIDP KRAKRIWANR  240
QSAARSKERK MRYIAELERK VQTLQTEATS LSAQLTLLQR DTNGLSAENN ELKLRLQTME  300
QQVHLQDGPF WKMILFAFLA FIDIVTLKVA LVSN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147651.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-126POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A0A0L8940.0A0A0A0L894_CUCSA; Uncharacterized protein
STRINGXP_004160642.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55173249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-123bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]