PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021859

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 1063aa MW: 115716 Da PI: 4.3584

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021859	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00084	14	36	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Cla021859 14 HVCNKCGWPFPNPHPSAKHRRAH 36 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	16	36	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MEHRDQRQES HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANTLLTVV 60 SDDDVDHKIP SPKVLGGSCG DKGVDGMKTK SKESEDEVFS DAVAEFSEGV GPNKSMGDAL 120 DSVSMAKTVV EDEMSSSQTL KDREVLDGVL CSTSSTDNQV VENSVIAENT IDQSGCELEN 180 KINQEFVNLE TESGTRLSSS STENRKNESS VGEETIIDQK GNEQGTKINQ EYGNLETNFR 240 NGNSVIPSID HINTTTTGDL YSNEPETIMP ALQQKLNIDS VEHMPQCSLP SPDRRCGDED 300 FDLCKNQTEI AAASGKIDND KSEPLPKMEE TIEIPTEPFA QFGTLQSVAD NDMLIHSEMP 360 QGVVLSEVKL KPESEVVPDV KPIDLTQVMP DARQELESCS SNNLLGTDII KEVNDNVHKP 420 SVSSDINIVD HPEALVEDSK DHAEVKLTNC VVQDPHEGVS GLEDNFNEPI PKESYFTLQA 480 EPFDQTSEVA SFDTKTVESR QKQEGGVKNV SVDVKADCSS NSGQEVEVLI QEVNAAQIEG 540 VLTENEKHGG KRQTLIDAAK FGIDSIPPAS FSSEVESVVP SNNSLDNLSE NVTEDLFSEV 600 GRGGVLLPDD ENKEGACGRD LEDAVQIYLP VDAHERKDNV VNEKDKSDNL DIAGVEDKKD 660 PPEDKFSMGI DSTPEHTTNS RENKCIAVAE ERADESSRKI SLTESTNSRK SDISLASDTQ 720 ESGKEDDCSS SVHVACISEV NSDDQSCHIG DFNSVRNSSD VHANKDANSV HVSNETLTGR 780 SDAFQDGSVS QLAGDGVRVA SETWKDDGVK TNVKPQLTSS LLDASVDAIS QTDSLEGNWG 840 SVSVLSTQSD LPAVVDGEAT LQARAGAEET DLKKVDAATE RQHSNRSDLF EPPSFMTLVE 900 PNGGGIQNSA TTEIQTARNR EQPNPASLQA GWFPSYTHVA NDSPGRKKNE AIIAKVANWS 960 AGKSHTALKN LLDDAALENK QKSATRMDNL ASMIQKDENP TKNGNIEKKV DSVTRPKSPT 1020 SHLGNREIAN EWDSPARYPS DIRRERRKGR PYWAQFVCCS SVH

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MEHRDQRQES HGVHVCNKCG WPFPNPHPSA KHRRAHKRVC GTIEGFKLVE SEANTLLTVV  60
SDDDVDHKIP SPKVLGGSCG DKGVDGMKTK SKESEDEVFS DAVAEFSEGV GPNKSMGDAL  120
DSVSMAKTVV EDEMSSSQTL KDREVLDGVL CSTSSTDNQV VENSVIAENT IDQSGCELEN  180
KINQEFVNLE TESGTRLSSS STENRKNESS VGEETIIDQK GNEQGTKINQ EYGNLETNFR  240
NGNSVIPSID HINTTTTGDL YSNEPETIMP ALQQKLNIDS VEHMPQCSLP SPDRRCGDED  300
FDLCKNQTEI AAASGKIDND KSEPLPKMEE TIEIPTEPFA QFGTLQSVAD NDMLIHSEMP  360
QGVVLSEVKL KPESEVVPDV KPIDLTQVMP DARQELESCS SNNLLGTDII KEVNDNVHKP  420
SVSSDINIVD HPEALVEDSK DHAEVKLTNC VVQDPHEGVS GLEDNFNEPI PKESYFTLQA  480
EPFDQTSEVA SFDTKTVESR QKQEGGVKNV SVDVKADCSS NSGQEVEVLI QEVNAAQIEG  540
VLTENEKHGG KRQTLIDAAK FGIDSIPPAS FSSEVESVVP SNNSLDNLSE NVTEDLFSEV  600
GRGGVLLPDD ENKEGACGRD LEDAVQIYLP VDAHERKDNV VNEKDKSDNL DIAGVEDKKD  660
PPEDKFSMGI DSTPEHTTNS RENKCIAVAE ERADESSRKI SLTESTNSRK SDISLASDTQ  720
ESGKEDDCSS SVHVACISEV NSDDQSCHIG DFNSVRNSSD VHANKDANSV HVSNETLTGR  780
SDAFQDGSVS QLAGDGVRVA SETWKDDGVK TNVKPQLTSS LLDASVDAIS QTDSLEGNWG  840
SVSVLSTQSD LPAVVDGEAT LQARAGAEET DLKKVDAATE RQHSNRSDLF EPPSFMTLVE  900
PNGGGIQNSA TTEIQTARNR EQPNPASLQA GWFPSYTHVA NDSPGRKKNE AIIAKVANWS  960
AGKSHTALKN LLDDAALENK QKSATRMDNL ASMIQKDENP TKNGNIEKKV DSVTRPKSPT  1020
SHLGNREIAN EWDSPARYPS DIRRERRKGR PYWAQFVCCS SVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011651106.1	0.0	PREDICTED: uncharacterized protein LOC101215780
TrEMBL	A0A0A0LAY3	0.0	A0A0A0LAY3_CUCSA; Uncharacterized protein
STRING	XP_008439045.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19