PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 147aa MW: 15996.3 Da PI: 10.4092 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.7 | 7.7e-19 | 38 | 72 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++ Cla021773 38 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 72 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.24E-12 | 31 | 71 | No hit | No description |
PROSITE profile | PS50114 | 12.347 | 32 | 68 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.2E-13 | 32 | 92 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 36 | 72 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.44E-13 | 37 | 72 | No hit | No description |
Pfam | PF00320 | 8.7E-17 | 38 | 72 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 38 | 63 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MMMDPSDRGS ESEDMSGKNS GGVSSEESQV NEQNKKTCAD CGTSKTPLWR GGPAGPKSLC 60 NACGIRSRKK RRAILGLSKG VVEDKKSKKS SNISNSKLRD SLKQRLLALG REVLMQRSTV 120 ERQRKKLGEE EQAAVLLMAL SYGSVYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-124 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-124 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023538706.1 | 1e-93 | GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 3e-52 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A0A0L942 | 2e-85 | A0A0A0L942_CUCSA; Uncharacterized protein | ||||
STRING | XP_008438922.1 | 1e-85 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-49 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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