PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23585 Da PI: 7.5027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.8e-21 | 85 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+ +++g Cla021765 85 SKYRGIRQRP-WGKWAAEIRDPQ----KgLRVWLGTYNTAEEAARAYDQAAIRIRG 135 89********.**********94....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-14 | 85 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-23 | 85 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-38 | 86 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 86 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.355 | 86 | 143 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.45E-34 | 87 | 142 | No hit | No description |
PRINTS | PR00367 | 1.4E-11 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MCGGAIISDY VDNLLWPHLD TTFSDLLGLD LDLDLDLSTQ NYPFNNTPSI VVETPKQLPQ 60 VKSEKVEGSE AAGSAMKKTK KVRKSKYRGI RQRPWGKWAA EIRDPQKGLR VWLGTYNTAE 120 EAARAYDQAA IRIRGKKAKL NFTQPPPLPL PSPPPQQLPT TSTPIDIQLK HQISSLESFL 180 GLDPSLPVEP MADPWWVDDL LIYQQQNLQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 87 | 142 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-22 | 85 | 142 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-78 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-78 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438910.1 | 2e-98 | PREDICTED: ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
TrEMBL | A0A1S3AY54 | 4e-97 | A0A1S3AY54_CUCME; ethylene-responsive transcription factor RAP2-3 isoform X1 | ||||
STRING | XP_008438910.1 | 7e-98 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-22 | ethylene-responsive element binding protein |