PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021721
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 480aa    MW: 51618.8 Da    PI: 8.6386
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021721genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.2e-124973327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C +++rtG+C yG+rC+F+H++
  Cla021721 49 EADCIYYLRTGFCGYGSRCRFNHPR 73
               789********************96 PP
2zf-CCCH38.32.3e-1295118326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ C++++rtG Ck+G++Ck++H+
  Cla021721  95 QPVCQYYMRTGMCKFGASCKYHHP 118
                689********************9 PP
3zf-CCCH36.21e-11140165227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C++++++G+Ck+G++CkF+H++
  Cla021721 140 GEKECSYYLKNGQCKFGATCKFHHPE 165
                7899********************96 PP
4zf-CCCH38.91.5e-12303329127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++++rtG Ck+G++C+++H+p
  Cla021721 303 PGQPECQYYMRTGDCKFGSSCRYHHPP 329
                5789*********************97 PP
5zf-CCCH33.66.5e-11351375327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++C +f++ G Ck+G+ CkF H++
  Cla021721 351 APPCTHFMQRGMCKFGPACKFDHSM 375
                689********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1364674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-94973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-65274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.57292120IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-794122IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-995118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-697121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61138166IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37302330IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6302329IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5306329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-5308329IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469348376IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7351374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6352379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5353376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MKPYGHSLEG SHSDPSPEWT ASGPDTPHGD SLWPLGSRER ESYPERPEEA DCIYYLRTGF  60
CGYGSRCRFN HPRERTAVLG GSRPGGREYP ERVGQPVCQY YMRTGMCKFG ASCKYHHPLQ  120
ERGSLSPVSL NFYGYPLRPG EKECSYYLKN GQCKFGATCK FHHPEPAGLQ FPAPSPVQVT  180
PMPPPVPTPS VYPPLQSPSA HSSQQYGVIL ARPSLLSSPY VPGPYGPMLV SPGVVQFPSW  240
SPYPAPMSPV ASPSAQPSVG SGPLYGMAHV SPSASGFAGS YQPMPSAGPS STSQKEHSFP  300
ERPGQPECQY YMRTGDCKFG SSCRYHHPPE LVTSRPSVVL SQLGLPLRPG APPCTHFMQR  360
GMCKFGPACK FDHSMDRLSY SPSASSLADM PVAPYPVGSV AGTLAPSSSS SELRPEHFSG  420
SRKDSNPSRM SSSMSTSSGL VGSTTSRTEM HSHSSVQRSS QSSGPSMGST SSTTRAEGRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134198.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-149C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1S3AY170.0A0A1S3AY17_CUCME; zinc finger CCCH domain-containing protein 34
STRINGXP_004134198.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]