PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021720
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 341aa    MW: 37324.6 Da    PI: 5.843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021720genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1752100355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Cla021720  52 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 100
                56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-2951107No hitNo description
PROSITE profilePS5103220.52151108IPR001471AP2/ERF domain
SMARTSM003808.0E-3351114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-2852108IPR001471AP2/ERF domain
PRINTSPR003672.3E-75263IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2052109IPR016177DNA-binding domain
PfamPF008479.2E-1154100IPR001471AP2/ERF domain
PRINTSPR003672.3E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MATSKASDKG YPIYETGQSQ MGFALIQRNS SPISQSGGER RGRRKQAEPG RFLGVRRRPW  60
GRYAAEIRDP TTKERHWLGT FDTAHEAALA YDRAALSMKG TQARTNFIYS DTSTFHSLLT  120
AFDVQTLLPN SDHSNSKLQQ TPSPITIPIN QNNNISFAQS QPSIPETSSN PSVHDDHDSN  180
FFFSNDSNSG YLSCIVPDNC LKPPSDSKHK TQPSSTTSND LQKFSFFTSN SIETLPFKSL  240
DVSSMAYNNN NNSNAGYGSV MDESNCSNDG VVWDKQQNWE SNSDELSAII NSSSSSSMVA  300
ENGAFHPFTN SSYGGLLPQS STCSPSAPSF GDAFDFGYTL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2042107571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438827.10.0PREDICTED: ethylene-responsive transcription factor ERF086
TrEMBLA0A1S3AY010.0A0A1S3AY01_CUCME; ethylene-responsive transcription factor ERF086
STRINGXP_008438827.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-57ERF family protein