PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021527

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 141aa MW: 15669 Da PI: 5.3298

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021527	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.8	1.5e-19	25	76	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + r r++lg+f taeeAa+a+++a+ +++g+ Cla021527 25 RYRGVRRRP-WGKFAAEIRDSR----RqgVRIWLGTFNTAEEAARAYDRAAYNMRGH 76 59*****.******42....124************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.538	25	83	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-34	25	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.5E-31	25	85	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-15	25	76	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-23	25	84	IPR016177	DNA-binding domain
CDD	cd00018	9.73E-18	25	84	No hit	No description
PRINTS	PR00367	1.3E-11	26	37	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-11	49	65	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MDESGGRGRS YAEDSTTAGG SREIRYRGVR RRPWGKFAAE IRDSRRQGVR IWLGTFNTAE 60 EAARAYDRAA YNMRGHLAIL NFPNEYPLTS SGGGGGAYSS GSSSSSSSMS MRQNEVIEFE 120 YLDDKVLEDL LDYGEESDKR S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-36	20	126	9	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	1e-127	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	1e-127	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023529041.1	7e-68	ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	2e-43	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A0A0L9V5	7e-57	A0A0A0L9V5_CUCSA; Uncharacterized protein
STRING	XP_004170780.1	1e-57	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	1e-32	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]