PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021419

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 319aa MW: 34692.4 Da PI: 6.6293

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021419	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.9	2.7e-34	54	108	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Cla021419 54 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 108 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-33	51	109	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.944	51	111	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-24	54	109	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.33E-17	54	111	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-8	56	107	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-26	151	197	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MLSGFSQEPA GMYSAIPAAF PPLPMDSGGG KFQGSLDGTN LPGDACLVLT SDPKPRLRWT 60 AELHERFVDA VTQLGGPDKA TPKTIMRTMG VKGLTLYHLK SHLQKYRLGK QSFKESTENS 120 KDASCIAESQ ETSSSSSPSS RIMTQDLNDG FQVTEALRVQ MEVQRRLHEQ LEVQRHLQLR 180 IEAQGKYLQS ILERACQALS DQAAASAGLE AAREELSELA IKVSNDSKEM APLETQKVLP 240 FSELAAALEN RKAPTVMPRI GDCSMDSCLT SAGSPVSPIR VGSTATAMKR PRPVFSHGDS 300 MTLEGNARHD VEWMMSNIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	54	110	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	54	110	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	292	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008438354.1	0.0	PREDICTED: myb family transcription factor APL isoform X1
Swissprot	Q94A57	1e-127	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A1S3AWU1	0.0	A0A1S3AWU1_CUCME; myb family transcription factor APL isoform X1
STRING	XP_008438354.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13367	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-113	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]