PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021394

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Trihelix

Protein Properties

Length: 360aa MW: 39745.7 Da PI: 9.8172

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021394	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.8	1.9e-20	52	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a Cla021394 52 CWSHEETIALIDSYRDKWYSLRRGNLKATHWQDVADSVshrcPNASPPKTAVQCRHKMEKLRKRYRTELQRARSMpLSRFTSSWVHFKRMDA 143 8******************************999996655666778999*******************977999********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-21	51	144	No hit	No description
SMART	SM00595	1.1E-11	60	149	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGSPSSPIDG SPPSSSHPSN PLQALTLSAP LPPPSNPPPQ PTASSRRLPP PCWSHEETIA 60 LIDSYRDKWY SLRRGNLKAT HWQDVADSVS HRCPNASPPK TAVQCRHKME KLRKRYRTEL 120 QRARSMPLSR FTSSWVHFKR MDAMEKGPSA KPEESDSGGE EEEEEEEDDQ ELYEEFRNAG 180 ASATRSVRKL YGNGINSGGS NSGGGGSSGD GTAAGGFRIR IPTGVSIAQP GLKNYPKAEQ 240 KMNPNSNPVS GMNSAAVNFG TRVVRESNPA RPVTGKRGER ERERDPVAEM VSAIKTLGDG 300 FVRMERMKME MAREIEAMRM EMEIKRTEMI LDSQQRIVEA FAKAVTENKK KTKRIPSPEA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGSPSSPIDG SPPSSSHPSN PLQALTLSAP LPPPSNPPPQ PTASSRRLPP PCWSHEETIA  60
LIDSYRDKWY SLRRGNLKAT HWQDVADSVS HRCPNASPPK TAVQCRHKME KLRKRYRTEL  120
QRARSMPLSR FTSSWVHFKR MDAMEKGPSA KPEESDSGGE EEEEEEEDDQ ELYEEFRNAG  180
ASATRSVRKL YGNGINSGGS NSGGGGSSGD GTAAGGFRIR IPTGVSIAQP GLKNYPKAEQ  240
KMNPNSNPVS GMNSAAVNFG TRVVRESNPA RPVTGKRGER ERERDPVAEM VSAIKTLGDG  300
FVRMERMKME MAREIEAMRM EMEIKRTEMI LDSQQRIVEA FAKAVTENKK KTKRIPSPEA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022924743.1	0.0	trihelix transcription factor ASIL2-like
Refseq	XP_023528712.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A0A0L413	0.0	A0A0A0L413_CUCSA; Uncharacterized protein
STRING	XP_004133978.1	0.0	(Cucumis sativus)
STRING	XP_004174107.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-74	Trihelix family protein