PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021292
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRF
Protein Properties Length: 501aa    MW: 55080 Da    PI: 10.0057
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021292genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC741.6e-23153197145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                d+epgrCrRtDGKkWRCs+++++ +k+CErH+hrgr+rsrk++e+
  Cla021292 153 DPEPGRCRRTDGKKWRCSQKTVPHQKYCERHMHRGRQRSRKPVEA 197
                79****************************************997 PP
2WRC64.41.7e-20390430242
        WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 
                 epgrCrRtDGKkWRC+r+v++++k+C  H+hrg+++  k+
  Cla021292 390 LEPGRCRRTDGKKWRCRRDVIPNQKYCALHMHRGSKKHLKP 430
                59********************************9887666 PP
3QLQ44.26e-1683118237
        QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 +T  Qlq+L++Q+l+ KyLaa++ vP +Ll++i+k
  Cla021292  83 ILTTGQLQELEQQVLIHKYLAAGLRVPTHLLVPIWK 118
                67889*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-782118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.18683118IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-1084117IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.195153197IPR014977WRC domain
PfamPF088796.6E-20154196IPR014977WRC domain
PROSITE profilePS5166720.622389433IPR014977WRC domain
PfamPF088791.9E-17391430IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEVHPVQSFP SSETGRGLRP RKADEAATAV MMMEVKKEIN RPENDEVSTP LLPSINLGLQ  60
IGTNSAGSRN ERTSVVRRSV ESILTTGQLQ ELEQQVLIHK YLAAGLRVPT HLLVPIWKSA  120
ARTLGSNVNG IYERHRSFIG FSPVGFDYRS MMDPEPGRCR RTDGKKWRCS QKTVPHQKYC  180
ERHMHRGRQR SRKPVEASES DSPSKKILLN NPDRDVRCTL DVPTPTICGK IKTKSHLSCD  240
FTTAIPFLPV EAAVPCPKTV SDTRPKSVTE TITGSMHGSS PIATSCADAT KTIRMVPASA  300
PNTTATCIST VPSINPTATA SVSTNYIVHL KDVCHMNFRE NCSKSHNNTG KIDPNIQKIA  360
SPGLGFSPNS VLQVPVCSSS LCDSKINLEL EPGRCRRTDG KKWRCRRDVI PNQKYCALHM  420
HRGSKKHLKP FQNAPVLVPS AATYGTMLPL VTTPLTKLEP ATLNTNLSMS IQADNKQRHT  480
EARSNVSSSS ETTITDTTIT A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438132.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A1S3AVM20.0A0A1S3AVM2_CUCME; growth-regulating factor 9
STRINGXP_008438131.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.19e-42growth-regulating factor 9