PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021189
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 276aa    MW: 31737.4 Da    PI: 5.9958
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021189genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-1989138255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+W+AeIrdp     r +r++lg+++taeeAa  +++a+ +l+g
  Cla021189  89 KFRGVRRRP-WGKWAAEIRDPL----RrTRVWLGTYDTAEEAAVVYDQAAVRLRG 138
                89*******.**********73....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-3088146IPR001471AP2/ERF domain
SMARTSM003805.6E-3789152IPR001471AP2/ERF domain
CDDcd000187.78E-3189145No hitNo description
SuperFamilySSF541717.19E-2289146IPR016177DNA-binding domain
PfamPF008472.0E-1289138IPR001471AP2/ERF domain
PROSITE profilePS5103223.53889146IPR001471AP2/ERF domain
PRINTSPR003671.6E-1090101IPR001471AP2/ERF domain
PRINTSPR003671.6E-10112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRVYSGVIK FREVRTITHK PAAETKLVRI SYTDADATDS SSGEDEEPIL IRHVKRHVTE  60
IRLLTTDCSK KAPPKSRVNP PRTTESHRKF RGVRRRPWGK WAAEIRDPLR RTRVWLGTYD  120
TAEEAAVVYD QAAVRLRGPN ALTNFVAETP HSETTLVTYL TPPPPENQST AAVVSDTKES  180
RSLCSPTSVL RLEEQNWRAI DHYLSEESGL EDEFNWLYDR NSNSFLFNLR SPQPIFPDQM  240
EMTNPKWEDF GDISVDFDSC KWDVENYFQD PNFSIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-20871511273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899074.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A1S4DSW20.0A0A1S4DSW2_CUCME; pathogenesis-related genes transcriptional activator PTI6-like
STRINGXP_008437958.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-35cytokinin response factor 4