PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021184
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bZIP
Protein Properties Length: 417aa    MW: 44242.4 Da    PI: 9.506
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021184genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.61.2e-22281343163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                ekelkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN a ++e+++l+++++klk+e+
  Cla021184 281 EKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKEN 343
                89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.9E-34197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.2E-27132263No hitNo description
Gene3DG3DSA:1.20.5.1702.7E-16275341No hitNo description
SMARTSM003388.3E-21281345IPR004827Basic-leucine zipper domain
PfamPF001708.9E-21281343IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.231283346IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-10284340No hitNo description
CDDcd147029.73E-21286334No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGTSEEAKSV KTEKPSSPTP DQNSVPNSAS IHVFPDWAAM QAYYGPRVAV PPYYNSAVAS  60
GHAPHPYMWA PPQMIPPYGT PYAAIYSHGG VYAHPAVSMG PHSHGPGVPS SPGAAPPLSI  120
ETPSKVSGNS SQGLMKKLKG FDGLAMSIGN VSTETAEGGA EHGQSESMET EGSSDGSDGT  180
TAGANQTKRK RSREGTPTTG KDAKIEPQAS PVTAAEMNES SSKLLGTTKA ANATGKLGSV  240
ISPGMSTALE LRNPSSINAM TSPTTVPPCS VLPSEVWLQN EKELKRERRK QSNRESARRS  300
RLRKQAETEE LARKVDSLTA ENVAIRSEIS RLSENSEKLK KENSTLMEKL KSAQSGRTEA  360
LDMNEKRMQQ PVSTETKGPV NKSINEESII CKKNSSSGAK LRQLLDTSPR ADAVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303RRSRLRK
2297304RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-95LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-95LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437949.10.0PREDICTED: common plant regulatory factor 1 isoform X2
SwissprotQ990891e-125CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A1S3AV690.0A0A1S3AV69_CUCME; common plant regulatory factor 1 isoform X2
TrEMBLE5GCG90.0E5GCG9_CUCME; Bzip transcription factor
STRINGXP_008437947.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-110G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]