PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25346.9 Da PI: 5.8514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 51 | 100 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr + +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++aa+++++g+ Cla021101 51 FRGVRKRN-WGKWVSEIREPRK---KTRIWLGTYPTPEMAARAHDAAALAIKGH 100 8****887.**********843...6************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-21 | 50 | 108 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.6E-34 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-31 | 50 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.60E-19 | 51 | 109 | No hit | No description |
Pfam | PF00847 | 8.7E-14 | 51 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-10 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEPFFNYIEA SDAKATTFCN SASITTHEYQ QVSKNRKQRS TQENRDHHPM FRGVRKRNWG 60 KWVSEIREPR KKTRIWLGTY PTPEMAARAH DAAALAIKGH SAFLNFPELA QFLPRPLSRS 120 HKDIQAAAAQ AAAATFSAGS DAEGGGGEAA EESRETLFPG SDGGDRTEDS TNSLSTAAGD 180 ETLFDLPDLF VGSSDLKDGF VYHSSLWQFC AAADHNGFRL EEPSFWELI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-16 | 48 | 107 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 0.0 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004134290.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q8LBQ7 | 1e-55 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0A0L8C6 | 1e-128 | A0A0A0L8C6_CUCSA; Uncharacterized protein | ||||
STRING | XP_004134290.1 | 1e-129 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 7e-42 | ERF family protein |
Publications ? help Back to Top | |||
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