PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021006
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 187aa    MW: 20930.8 Da    PI: 7.0297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021006genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-19755254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
               +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Cla021006  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
               8*******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.96E-34666No hitNo description
SMARTSM003801.7E-40770IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21766IPR016177DNA-binding domain
PROSITE profilePS5103221.127764IPR001471AP2/ERF domain
PfamPF008471.8E-11756IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-34764IPR001471AP2/ERF domain
PRINTSPR003673.0E-11819IPR001471AP2/ERF domain
PRINTSPR003673.0E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MARPQKRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPKAR  60
TNFPYNPNAI QSSNSRILSA NLTAKLHRCY MASLQISNQA SGEFKRDIPA VFPASTPLPH  120
AVVGSGVASS AVEEIGPAAE QGPCAADWMV RSVKMESEFG ELKLLEDDHI EQMIEELLYY  180
GSMEFCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17669468ATERF1
3gcc_A3e-17669468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818612e-89LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132612e-89LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654234.11e-112PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-68ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0A0L5N21e-111A0A0A0L5N2_CUCSA; Uncharacterized protein
STRINGXP_004167665.11e-112(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]