PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021001
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TALE
Protein Properties Length: 474aa    MW: 52802.7 Da    PI: 6.9019
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021001genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-074054382154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Cla021001 405 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 438
                469*****************************87 PP
2ELK22.33.1e-08359380122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+ +Y+++++++++E++
  Cla021001 359 ELKHELKAGYKEKIVDIREEIL 380
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-20190234IPR005540KNOX1
PfamPF037907.9E-18192233IPR005540KNOX1
SMARTSM012561.7E-28247302IPR005541KNOX2
PfamPF037913.4E-21251301IPR005541KNOX2
SMARTSM011880.0026359380IPR005539ELK domain
PfamPF037894.5E-5359380IPR005539ELK domain
PROSITE profilePS512139.289359379IPR005539ELK domain
PROSITE profilePS5007111.855379442IPR001356Homeobox domain
SMARTSM003894.0E-11381446IPR001356Homeobox domain
SuperFamilySSF466891.03E-15381446IPR009057Homeodomain-like
CDDcd000866.96E-12382443No hitNo description
Gene3DG3DSA:1.10.10.608.0E-25386443IPR009057Homeodomain-like
PfamPF059201.4E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAYHNHLSQD LPLHFSDHHQ NQPLSDTSLR TILPDQLPGA HSSPDPKSHQ PHHHHHHHPL  60
QTAPNWLNNA LLRNQNPHSH YSTDTTATAA AAANTNFLNL HTTASDSTVS HSSNQWLSRP  120
ILHRNHSDVI DDVAAAAAGD AMIGAATAAL SHDSGDMKND ANSGDGLNKS EGMVMETGAG  180
GEGVLNWQHA RYKAEILAHP LYEQLLSAHV ACLRIATPVD QLPRIDAQLA QSQNVVAKYS  240
ALGHSAPPSM VGDDKELDQF MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WDIEQSLQSL  300
TGVSPGEGTG ATMSDDDDDQ VNSDANLFDG SLEGPDTMGF GPLIPTESER SLMERVRQEL  360
KHELKAGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKQWW QSHSKWPYPT EEDKARLVQE  420
TGLQLKQINN WFINQRKRNW HSNPSSSTNL KSKRKSYRRG WGRRNICCVE GRKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A4e-12382446872Homeobox protein PKNOX1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022976159.10.0homeobox protein knotted-1-like 3 isoform X2
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3BUC90.0A0A1S3BUC9_CUCME; homeobox protein knotted-1-like 3 isoform X2
STRINGXP_004157089.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-180KNOTTED1-like homeobox gene 3