PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020969

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

ERF

Protein Properties

Length: 190aa MW: 21286 Da PI: 8.3428

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020969	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.4	4.1e-19	6	55	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p +r++lg+f+tae+Aa+a+++a+ ++g Cla020969 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFDTAEDAARAYDQAAILMNG 55 89**999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	6.5E-33	5	65	IPR001471	AP2/ERF domain
CDD	cd00018	1.74E-33	6	65	No hit	No description
SuperFamily	SSF54171	1.31E-20	6	65	IPR016177	DNA-binding domain
SMART	SM00380	7.4E-40	6	69	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.904	6	63	IPR001471	AP2/ERF domain
Pfam	PF00847	8.8E-12	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVYSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE DAARAYDQAA ILMNGQNAKT 60 NFPASKDQSE EASHGHGSSS MSPKALSELL STKLRKCCKN PSPSLTCLRL DSDNAHIGVW 120 QKRAGTRATS NWVMRIELGK KEMPSPSLSP ELTSQEADDH GNGIDEEDRI AMQMIEELLN 180 WNCPLPSTSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-17	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00527	DAP	Transfer from AT5G25390	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	1e-142	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	1e-142	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022936544.1	1e-131	ethylene-responsive transcription factor SHINE 2 isoform X1
Swissprot	Q3E958	3e-80	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A1S3CR71	1e-124	A0A1S3CR71_CUCME; ethylene-responsive transcription factor SHINE 2-like
STRING	XP_008466408.1	1e-124	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF576	33	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	8e-71	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]