PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla020899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TALE | ||||||||
Protein Properties | Length: 363aa MW: 41664.8 Da PI: 6.4587 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 290 | 325 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Cla020899 290 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 325 5679*****************************885 PP | |||||||
2 | ELK | 37.9 | 3.7e-13 | 245 | 266 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Cla020899 245 ELKNHLLRKYSGYLSSLKQELS 266 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 8.8E-21 | 101 | 145 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.3E-21 | 102 | 144 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.9E-29 | 152 | 203 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.1E-24 | 157 | 202 | IPR005541 | KNOX2 |
SMART | SM01188 | 1100 | 161 | 181 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 245 | 266 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 245 | 265 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.5E-10 | 245 | 266 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.908 | 265 | 328 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-20 | 266 | 341 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 7.7E-13 | 267 | 332 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-27 | 270 | 331 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.93E-12 | 277 | 329 | No hit | No description |
Pfam | PF05920 | 1.4E-16 | 285 | 324 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 303 | 326 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEEYNNEVNE NSNGRGNFLY GSGNSSSGNF GRSTAEMGVV NTFHLQHGTD CFQPHHPIVK 60 TEATTSHHQL LKFHYPLIRP PPPAHPPPTC RPEQNGVVDV EAIKAKILAH PQYSSLLEAY 120 MECQKVGAPP QVVERLVAAR QEFEARQRSS MVSGDTTKDP ELDQFMEAYY DMLVKYREEL 180 SRPIQEAMDF MRRIESQLTS LCNGPVRIFN SDEKCEGMGS SEEEQDNSGG ETELPEIDPR 240 AEDRELKNHL LRKYSGYLSS LKQELSKKKK KGKLPKDARQ KLLNWWELHY KWPYPSETEK 300 VALAESTGLD QKQINNWFIN QRKRHWKPSE DMQFMVMDGL HPPNAALYID GHYMTDGHYR 360 LGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 1e-112 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 1e-112 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452690.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 1e-178 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A1S3BUG3 | 0.0 | A0A1S3BUG3_CUCME; homeobox protein knotted-1-like 2 | ||||
STRING | XP_008452690.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-143 | KNOTTED-like from Arabidopsis thaliana |