PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020879
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 267aa    MW: 29252.6 Da    PI: 8.5693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020879genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.7e-19107140134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Cla020879 107 CSDCNTTTTPLWRSGPQGPKSLCNACGIRQRKAR 140
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.099101137IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-20101152IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13102141No hitNo description
Gene3DG3DSA:3.30.50.108.6E-16105140IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.56E-13106143No hitNo description
PfamPF003205.0E-17107140IPR000679Zinc finger, GATA-type
PROSITE patternPS003440107132IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MREGCERSRL LEKQVEDDHH QMVKKQDHNG SAKYWMSSKM RLMQKMMINT NNKKVINSGA  60
NSDNQKATRN YNNNNNEGGG GKWETMTDKS SSCNSNIGVH NNGVRVCSDC NTTTTPLWRS  120
GPQGPKSLCN ACGIRQRKAR RAMAEAANGG GGSVVELEAA AASGKKEMHK EKKSRLSCNG  180
DNNGGIVGDV KINKCNNNDD EHNSNNLKSE SELGMMNNEV SFDGTHNFTL RLSKSNGPSA  240
LGRVFPRDEE EAAILLMELS CGLLHTC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818613e-36LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132613e-36LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654173.11e-113PREDICTED: GATA transcription factor 21-like
TrEMBLA0A0A0L3Z91e-112A0A0A0L3Z9_CUCSA; Uncharacterized protein
STRINGXP_008452719.11e-111(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-24GATA family protein