PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020803
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SRS
Protein Properties Length: 305aa    MW: 34215.5 Da    PI: 7.3808
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020803genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702198.42.3e-611062453154
     DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102
                + +++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq +++ +++++  ++ ++k++r++    q      +l+ + +++ le+
  Cla020803 106 ASGMNCQDCGNQAKKDCSHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQQRHQQFRTDQS--DQITPKNHRQH----Q-----LSLPLT-TNSGLEV 193
                5679***********************************************999987666544..33344444433....2.....222222.2457899 PP

     DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                +++  e +s+avfrcv+vs++d+ ee+laYqtav+igGh+fkGiLydqG+e+
  Cla020803 194 ANFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPES 245
                99************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.6E-59108244IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-27110152IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.8E-24196243IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MTDLFYLDRK QEEDPEERAR SEQQLFLYSR SNNNQEIYST GLQIWPQYTH NHHHPQQQQN  60
VENYISFGVG PSRTTSFMIN GSDHDFTSRS GFTMMRHGHG GGSGGASGMN CQDCGNQAKK  120
DCSHLRCRTC CKSRGFHCQT HVKSTWVPAA KRRERQQQRH QQFRTDQSDQ ITPKNHRQHQ  180
LSLPLTTNSG LEVANFQGEF NSSAVFRCVK VSAIDNVEEQ LAYQTAVNIG GHMFKGILYD  240
QGPESSQNLS TGGDDREDGG QGLDLVIGAS NSGGRVNQTT PFVESSMYPI PINTFGTQNF  300
PSTRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466512.11e-153PREDICTED: protein SHI RELATED SEQUENCE 3
TrEMBLA0A1S3CRF21e-152A0A1S3CRF2_CUCME; protein SHI RELATED SEQUENCE 3
STRINGXP_008466512.11e-152(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.18e-56Lateral root primordium (LRP) protein-related