PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020715

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 265aa MW: 29547.7 Da PI: 10.1131

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020715	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.2e-32	99	152	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Cla020715 99 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 152 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.96E-16	96	153	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	97	153	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	99	152	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	100	151	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0080060	Biological Process	integument development
GO:0005618	Cellular Component	cell wall
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MNTPSSLPDL SLQISLPMSM MLTPPCETKA KPRSSTTTDS SCSGKSDLSH ENGLFRLGFE 60 VGDMDVLPRR RHHNVRGRRD FKRSGGGVGC GVRRSIRAPR MRWTTTLHAH FVHAVQLLGG 120 HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKNTVKVT DDCGRTEIEE DAIVLSSSVQ 180 KSNFQSPPLQ RIQRSSLVTS MHKSCDRTKS NADAFAKSRG MKVEGSNGDY HEAITMQRIN 240 LEFTLGRPSW QLDYGDAKEL ALLNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-17	100	154	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00107	PBM	Transfer from AT5G42630	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681826	2e-62	LN681826.1 Cucumis melo genomic scaffold, anchoredscaffold00032.
GenBank	LN713258	2e-62	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011652394.1	1e-144	PREDICTED: probable transcription factor KAN4
Swissprot	Q9FJV5	6e-54	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A0A0LFY8	1e-143	A0A0A0LFY8_CUCSA; Uncharacterized protein
STRING	XP_008454673.1	1e-141	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4463	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	1e-46	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]