PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020655

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 299aa MW: 33237.6 Da PI: 7.8283

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020655	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.5	2.4e-27	14	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppG++F P+de+l+ +yL +k++++ + + ik++d ++++P dLp ++++k+wy+++ ++ +++ r + +ksgyW+ Cla020655 14 LPPGCHFFPSDEQLLRFYLSNKTTATIspnllnngaSKGYNLIKDLDPFDYDPFDLPDfacfsyGSRGRKKHWYYYAVTAFREN---RGRIRMKSGYWRR 110 79******************98877556655554333448***********44777654445778*99987654...44445689* PP NAM 86 tgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 +g+ +ev+ ++g + g+k+++vfy g + ++++kt+W+m ey+l Cla020655 111 KGRVREVIGHRGVVLGMKRSFVFYLGnSIKNAVKTNWIMYEYAL 154 ********************874678899*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-33	10	169	IPR003441	NAC domain
PROSITE profile	PS51005	33.298	14	170	IPR003441	NAC domain
Pfam	PF02365	4.1E-17	15	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEHTQSLEPS SSSLPPGCHF FPSDEQLLRF YLSNKTTATI SPNLLNNGAS KGYNLIKDLD 60 PFDYDPFDLP DFACFSYGSR GRKKHWYYYA VTAFRENRGR IRMKSGYWRR KGRVREVIGH 120 RGVVLGMKRS FVFYLGNSIK NAVKTNWIMY EYALGDHFKA SCVLHRVFVS GRGNSISGNG 180 LSSYGDGSVS AICHNGNQQD GIQVTNMVEA GPCEGDTLNT NNGITRHVMV RAEKPNCLLV 240 TEPVSAPTTS QVPSEAHPCE MMTSSPVIPP GSMPTHVIDK QKLISILEGD FLELDDLVD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	13	154	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	13	154	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	13	154	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	13	154	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	3e-17	13	154	19	145	NAC domain-containing protein 19
3swm_B	3e-17	13	154	19	145	NAC domain-containing protein 19
3swm_C	3e-17	13	154	19	145	NAC domain-containing protein 19
3swm_D	3e-17	13	154	19	145	NAC domain-containing protein 19
3swp_A	3e-17	13	154	19	145	NAC domain-containing protein 19
3swp_B	3e-17	13	154	19	145	NAC domain-containing protein 19
3swp_C	3e-17	13	154	19	145	NAC domain-containing protein 19
3swp_D	3e-17	13	154	19	145	NAC domain-containing protein 19
4dul_A	3e-17	13	154	16	142	NAC domain-containing protein 19
4dul_B	3e-17	13	154	16	142	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	1e-119	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	1e-119	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022143484.1	1e-163	NAC domain-containing protein 19-like isoform X2
TrEMBL	A0A1S3BU62	1e-159	A0A1S3BU62_CUCME; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_008452571.1	1e-160	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-14	NAC domain containing protein 74