PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla020648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 151aa MW: 17104.1 Da PI: 9.707 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.6e-18 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Cla020648 28 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 77 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.1E-36 | 28 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-21 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.036 | 28 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-11 | 29 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-27 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010941 | Biological Process | regulation of cell death | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MEGQVCSAVN SSPKRKQKHQ NHLQQEKPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYTT 60 PVAAARAYDT AVFYLRGPTA RLNFPELMFE ADQLHDMSAA SIRKRATEVG ARVDAIQTSL 120 HASNSNSNSA TQISDKPDLN EYPNPETSDD D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 27 | 85 | 4 | 63 | ATERF1 |
3gcc_A | 2e-15 | 27 | 85 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00401 | DAP | Transfer from AT3G50260 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 1e-138 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 1e-138 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452588.1 | 4e-99 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9SNE1 | 1e-54 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A0A1S3BU56 | 9e-98 | A0A1S3BU56_CUCME; ethylene-responsive transcription factor ERF011-like | ||||
STRING | XP_008452588.1 | 1e-98 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50260.1 | 3e-55 | cooperatively regulated by ethylene and jasmonate 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|