PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020642
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 380aa    MW: 41065.3 Da    PI: 10.0979
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020642genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30309366359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYe++Hnh 
  Cla020642 309 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLIVTYENDHNHA 366
                99************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.5E-18260305IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-32296366IPR003657WRKY domain
PROSITE profilePS5081129.585302368IPR003657WRKY domain
SuperFamilySSF1182903.4E-26305366IPR003657WRKY domain
SMARTSM007743.1E-36307367IPR003657WRKY domain
PfamPF031063.5E-26309365IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAVELMVGFG DATTPTNFTP KMEENAAVSA VQEAASAGIQ SVQNFLRLMS HTPNHQHSQD  60
DSSASTTPNA IAGYEAVADS VVSKFKKVIS LLDRSRTGHA RFRRAPVLTT TPPPPPPPKV  120
KPQHQDPSSS SPISVPQIQV KKQESVSAFK VYCPTPSPVV RLPPLPHNNS HQPSHPPNTF  180
QAQQNTSSVV LKNGSVDRKD ATTTINFAAS PPISAANSYI SSLTGDTESL QPSLSSGFQF  240
THMSQVSSAG KPPLSSSSLK RKCNSMEDSA MKCGSSSGRC HCSKKRKNRI KRVIRVPAVS  300
SKLADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSLRGCP ARKHVERALD DPTMLIVTYE  360
NDHNHAHSTE TPAALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20295365271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840270.0GU984027.1 Cucumis sativus WRKY protein (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022937239.10.0probable WRKY transcription factor 7 isoform X2
RefseqXP_023536442.10.0probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-108WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1S3BVC40.0A0A1S3BVC4_CUCME; probable WRKY transcription factor 7 isoform X2
STRINGXP_008452579.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-77WRKY DNA-binding protein 7