PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020582
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 468aa    MW: 52537.3 Da    PI: 5.3748
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020582genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.35.1e-137484621373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lLl+cA+ v+ g+ e+a+  L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++    ++ ee+ a++lf+e++P+lk++++++Nq
  Cla020582  48 LIHLLLACANQVAIGNIENANVGLEQISHLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTKIL--SVPEEILAQRLFFELCPFLKLAYVITNQ 145
                689*************************************************************988887..59************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                aI ea+ege+++HiiDf   +++QW++Llq+L +Rp+gpp+lRiTg+++    +ke le+++ rL++ Ae+ ++pf+f++ v+++le+l+le+L+vk+gE
  Cla020582 146 AIIEAMEGERMIHIIDFKSCEPAQWINLLQTLKDRPDGPPHLRITGIHE----QKEVLEQMALRLTEEAEKWDIPFQFTP-VVSKLENLDLESLKVKTGE 240
                *************************************************....9**************************.799**************** PP

       GRAS 201 alaVnlvlqlhrll.....................................................desvsleserdevLklvkslsPkvvvvveqead 247
                alaV++vl+lh++l                                                     + s+    + +++L ++++lsPkv+v++eqe++
  Cla020582 241 ALAVSSVLELHSVLatdddkktspsasknlqkllrmkqrtlgewletdslqvfgspdsasvsspsglNPSQ----KMNSFLTALWGLSPKVMVITEQESN 336
                *********************************************************99998644433333....5667********************* PP

       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                +n++ F+er+leal++y+alfd+le++++r s er+ vE++llg+ei+n++aceg er+erhe+le+W  rle++GF++vpls++ +   ++ll+ ++ d
  Cla020582 337 LNGSAFMERVLEALNFYAALFDCLESTVSRSSIERQRVEKMLLGEEIKNIIACEGVERTERHEKLERWILRLESVGFGKVPLSYHSMLLGSRLLQSYGYD 436
                **************************************************************************************************** PP

       GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                gy+++ee+g l+++W+drpL+svSaW
  Cla020582 437 GYKIKEENGFLFICWQDRPLFSVSAW 462
                ************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.80522443IPR005202Transcription factor GRAS
PfamPF035141.8E-13448462IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAGMFNGEGS SSVTSSPLQF FPWSLSPGIG SPYPFLRELK SEERGLCLIH LLLACANQVA  60
IGNIENANVG LEQISHLASP DGDTMQRIAA YFTEALADRI LKSWPGLHKA LNSTKILSVP  120
EEILAQRLFF ELCPFLKLAY VITNQAIIEA MEGERMIHII DFKSCEPAQW INLLQTLKDR  180
PDGPPHLRIT GIHEQKEVLE QMALRLTEEA EKWDIPFQFT PVVSKLENLD LESLKVKTGE  240
ALAVSSVLEL HSVLATDDDK KTSPSASKNL QKLLRMKQRT LGEWLETDSL QVFGSPDSAS  300
VSSPSGLNPS QKMNSFLTAL WGLSPKVMVI TEQESNLNGS AFMERVLEAL NFYAALFDCL  360
ESTVSRSSIE RQRVEKMLLG EEIKNIIACE GVERTERHEK LERWILRLES VGFGKVPLSY  420
HSMLLGSRLL QSYGYDGYKI KEENGFLFIC WQDRPLFSVS AWGFHRQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-66324622377Protein SCARECROW
5b3h_D5e-66324622377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446918.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A1S3BH330.0A0A1S3BH33_CUCME; scarecrow-like protein 3 isoform X1
STRINGXP_008446918.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]