PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020528
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 467aa    MW: 51676.9 Da    PI: 6.7078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020528genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.3e-52301571128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL   +++k++++e+yfFs  dkky +g r nrat++gyWkatg+d++v + +++
  Cla020528  30 LAPGFRFHPTDEELVIYYLKRKVCGKSFRF-NAISEVDIYKSEPWDLAgkSRLKSRDQEYYFFSVLDKKYGNGARMNRATSQGYWKATGNDRPVRH-DSR 127
                579*************************99.89**************85348889999**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                +vglkktLvf++grap+g++t+Wvmheyrl
  Cla020528 128 TVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 157
                ****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5824201IPR003441NAC domain
PROSITE profilePS5100556.1130201IPR003441NAC domain
PfamPF023656.0E-2632157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGSETLTLST PLPPTKPVAA AAATAAPTAL APGFRFHPTD EELVIYYLKR KVCGKSFRFN  60
AISEVDIYKS EPWDLAGKSR LKSRDQEYYF FSVLDKKYGN GARMNRATSQ GYWKATGNDR  120
PVRHDSRTVG LKKTLVFHSG RAPDGKRTNW VMHEYRLVDE ELEKAGAGTG SSQLSFLQSS  180
LSPLSSPLEK DAYVLCRVFH KSNIGPPNGH RYAPFIEEEW DDAGSVLIPG EEIADGKIAS  240
HDAQSERNSN SVCAAEGSNN GACGEGKDGM QDKAHFINKD PVISNDPPRN SHNFLFVCKS  300
EKLEDYTPPS IIANPKPFPL MKYKRRRQSD LNSELSKGSE NSSMSNEEHS LSETAIASQT  360
DITTTSVTTP TTKNFLSTLV EYSLLESAEP KDAPAPPPAL ETSDLSSSVH PSILKFIQDL  420
QHEIHKTSME RETLKFELLS ARAMISILQS RIVVLNKEIN DLKSNYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-463020315170Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142442.10.0PREDICTED: NAC transcription factor ONAC010
TrEMBLA0A0A0KWQ00.0A0A0A0KWQ0_CUCSA; Uncharacterized protein
STRINGXP_004168805.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-114NAC domain containing protein 50